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Cluster: Rep_303_CGC21

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_303_c_13 Rep_303_c_13_27 39179 42334 + 1.B.14.6.1
pfam Rep_303_c_13 Rep_303_c_13_28 42350 44041 + SusD_RagB | SusD-like_3
pfam Rep_303_c_13 Rep_303_c_13_29 44059 45471 + SGBP_B_XBD
CAZyme Rep_303_c_13 Rep_303_c_13_30 45513 47828 + GH10
CAZyme Rep_303_c_13 Rep_303_c_13_31 47920 49626 + GH35
TC Rep_303_c_13 Rep_303_c_13_32 49668 51104 + 2.A.2.3.2
CAZyme Rep_303_c_13 Rep_303_c_13_33 51120 52250 + GH10
CAZyme Rep_303_c_13 Rep_303_c_13_34 52260 53231 + GH43_1
CAZyme Rep_303_c_13 Rep_303_c_13_35 53231 54985 + GH67
Gene ID: Rep_303_c_13_27
Type: TC
Location: 39179 - 42334 (+)
Gene ID: Rep_303_c_13_28
Type: pfam
Location: 42350 - 44041 (+)
Gene ID: Rep_303_c_13_29
Type: pfam
Location: 44059 - 45471 (+)
Gene ID: Rep_303_c_13_30
Type: CAZyme
Location: 45513 - 47828 (+)
Gene ID: Rep_303_c_13_31
Type: CAZyme
Location: 47920 - 49626 (+)
Gene ID: Rep_303_c_13_32
Type: TC
Location: 49668 - 51104 (+)
Gene ID: Rep_303_c_13_33
Type: CAZyme
Location: 51120 - 52250 (+)
Gene ID: Rep_303_c_13_34
Type: CAZyme
Location: 52260 - 53231 (+)
Gene ID: Rep_303_c_13_35
Type: CAZyme
Location: 53231 - 54985 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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