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Cluster: Rep_303_CGC13

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_303_c_7 Rep_303_c_7_19 24601 24972 + 3.D.1.8.1
TC Rep_303_c_7 Rep_303_c_7_20 24963 25577 + 3.D.1.6.1
TC Rep_303_c_7 Rep_303_c_7_21 25584 27215 + 3.D.1.5.1
TC Rep_303_c_7 Rep_303_c_7_22 27255 28334 + 3.D.1.5.1
TC Rep_303_c_7 Rep_303_c_7_23 28363 29865 + 3.A.2.1.2
pfam Rep_303_c_7 Rep_303_c_7_24 29873 30109 + ATP-synt_DE_N
TC Rep_303_c_7 Rep_303_c_7_25 30146 31522 + 3.A.2.1.6
TC Rep_303_c_7 Rep_303_c_7_26 31560 31829 + 3.A.2.1.6
pfam Rep_303_c_7 Rep_303_c_7_27 31910 32404 + ATP-synt_B | Mt_ATP-synt_B
pfam Rep_303_c_7 Rep_303_c_7_28 32409 32957 + OSCP
TC Rep_303_c_7 Rep_303_c_7_29 32959 34542 + 3.A.2.1.3
TC Rep_303_c_7 Rep_303_c_7_30 34562 35437 + 3.A.2.1.1
STP Rep_303_c_7 Rep_303_c_7_31 35482 36030 + Fer4 | Fer4
pfam Rep_303_c_7 Rep_303_c_7_32 36071 36598 + Oxidored_q3
TC Rep_303_c_7 Rep_303_c_7_33 36604 36915 + 3.D.1.2.1
TC Rep_303_c_7 Rep_303_c_7_34 36918 38903 + 3.D.1.2.1
TC Rep_303_c_7 Rep_303_c_7_35 38930 40447 + 3.D.1.2.1
TC Rep_303_c_7 Rep_303_c_7_36 40475 41938 + 3.D.9.1.1
NULL(UNKNOWN) Rep_303_c_7 Rep_303_c_7_37 41976 42182 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_303_c_7 Rep_303_c_7_38 42219 44171 + GH133
CAZyme Rep_303_c_7 Rep_303_c_7_39 44190 45449 + GT4
CAZyme Rep_303_c_7 Rep_303_c_7_40 45458 46918 + GH57
pfam Rep_303_c_7 Rep_303_c_7_41 47339 48991 + AMP-binding | AMP-binding_C
CAZyme Rep_303_c_7 Rep_303_c_7_42 48994 51378 - GH2
TC Rep_303_c_7 Rep_303_c_7_43 51947 53350 + 9.B.126.2.1
TC Rep_303_c_7 Rep_303_c_7_44 53325 53984 - 2.A.115.2.14
Gene ID: Rep_303_c_7_19
Type: TC
Location: 24601 - 24972 (+)
Gene ID: Rep_303_c_7_20
Type: TC
Location: 24963 - 25577 (+)
Gene ID: Rep_303_c_7_21
Type: TC
Location: 25584 - 27215 (+)
Gene ID: Rep_303_c_7_22
Type: TC
Location: 27255 - 28334 (+)
Gene ID: Rep_303_c_7_23
Type: TC
Location: 28363 - 29865 (+)
Gene ID: Rep_303_c_7_24
Type: pfam
Location: 29873 - 30109 (+)
Gene ID: Rep_303_c_7_25
Type: TC
Location: 30146 - 31522 (+)
Gene ID: Rep_303_c_7_26
Type: TC
Location: 31560 - 31829 (+)
Gene ID: Rep_303_c_7_27
Type: pfam
Location: 31910 - 32404 (+)
Gene ID: Rep_303_c_7_28
Type: pfam
Location: 32409 - 32957 (+)
Gene ID: Rep_303_c_7_29
Type: TC
Location: 32959 - 34542 (+)
Gene ID: Rep_303_c_7_30
Type: TC
Location: 34562 - 35437 (+)
Gene ID: Rep_303_c_7_31
Type: STP
Location: 35482 - 36030 (+)
Gene ID: Rep_303_c_7_32
Type: pfam
Location: 36071 - 36598 (+)
Gene ID: Rep_303_c_7_33
Type: TC
Location: 36604 - 36915 (+)
Gene ID: Rep_303_c_7_34
Type: TC
Location: 36918 - 38903 (+)
Gene ID: Rep_303_c_7_35
Type: TC
Location: 38930 - 40447 (+)
Gene ID: Rep_303_c_7_36
Type: TC
Location: 40475 - 41938 (+)
Gene ID: Rep_303_c_7_37
Type:
Location: 41976 - 42182 (-)
Gene ID: Rep_303_c_7_38
Type: CAZyme
Location: 42219 - 44171 (+)
Gene ID: Rep_303_c_7_39
Type: CAZyme
Location: 44190 - 45449 (+)
Gene ID: Rep_303_c_7_40
Type: CAZyme
Location: 45458 - 46918 (+)
Gene ID: Rep_303_c_7_41
Type: pfam
Location: 47339 - 48991 (+)
Gene ID: Rep_303_c_7_42
Type: CAZyme
Location: 48994 - 51378 (-)
Gene ID: Rep_303_c_7_43
Type: TC
Location: 51947 - 53350 (+)
Gene ID: Rep_303_c_7_44
Type: TC
Location: 53325 - 53984 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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