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Cluster: Rep_303_CGC12

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_303_c_6 Rep_303_c_6_34 42487 43914 - GH13_28
TC Rep_303_c_6 Rep_303_c_6_35 44038 44742 + 3.A.25.1.1
pfam Rep_303_c_6 Rep_303_c_6_36 44754 45515 + DHODB_Fe-S_bind
STP Rep_303_c_6 Rep_303_c_6_37 45512 47020 + Pyr_redox_2
TC Rep_303_c_6 Rep_303_c_6_38 47043 48056 - 1.A.23.2.1
pfam Rep_303_c_6 Rep_303_c_6_39 48124 49581 - TRAM | tRNA_U5-meth_tr | Methyltransf_25 | Methyltransf_31
pfam Rep_303_c_6 Rep_303_c_6_40 49723 50421 + Vut_1
TC Rep_303_c_6 Rep_303_c_6_41 50453 52345 - 3.A.24.1.1
pfam Rep_303_c_6 Rep_303_c_6_42 52764 53969 - Phage_integrase | Phage_int_SAM_5 | Arm-DNA-bind_5
TC Rep_303_c_6 Rep_303_c_6_43 54143 56848 + 3.A.3.2.17
TC Rep_303_c_6 Rep_303_c_6_44 56947 57981 - 2.A.4.7.9
Gene ID: Rep_303_c_6_34
Type: CAZyme
Location: 42487 - 43914 (-)
Gene ID: Rep_303_c_6_35
Type: TC
Location: 44038 - 44742 (+)
Gene ID: Rep_303_c_6_36
Type: pfam
Location: 44754 - 45515 (+)
Gene ID: Rep_303_c_6_37
Type: STP
Location: 45512 - 47020 (+)
Gene ID: Rep_303_c_6_38
Type: TC
Location: 47043 - 48056 (-)
Gene ID: Rep_303_c_6_39
Type: pfam
Location: 48124 - 49581 (-)
Gene ID: Rep_303_c_6_40
Type: pfam
Location: 49723 - 50421 (+)
Gene ID: Rep_303_c_6_41
Type: TC
Location: 50453 - 52345 (-)
Gene ID: Rep_303_c_6_42
Type: pfam
Location: 52764 - 53969 (-)
Gene ID: Rep_303_c_6_43
Type: TC
Location: 54143 - 56848 (+)
Gene ID: Rep_303_c_6_44
Type: TC
Location: 56947 - 57981 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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