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Cluster: Rep_303_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_303_c_0 Rep_303_c_0_6 7604 10975 + 1.B.14.6.1
pfam Rep_303_c_0 Rep_303_c_0_7 10982 12688 + SusD_RagB | SusD-like_3
CAZyme Rep_303_c_0 Rep_303_c_0_8 12762 14276 + GH30
NULL(UNKNOWN) Rep_303_c_0 Rep_303_c_0_9 14304 16772 + NULL(UNKNOWN)
[View Structural Homologs]
NULL(UNKNOWN) Rep_303_c_0 Rep_303_c_0_10 16859 17383 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_303_c_0 Rep_303_c_0_11 17394 19601 + GH36
CAZyme Rep_303_c_0 Rep_303_c_0_12 19608 22637 + GH97
NULL(UNKNOWN) Rep_303_c_0 Rep_303_c_0_13 22622 23266 - NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_303_c_0 Rep_303_c_0_14 23447 25114 - 4.C.1.1.4
Gene ID: Rep_303_c_0_6
Type: TC
Location: 7604 - 10975 (+)
Gene ID: Rep_303_c_0_7
Type: pfam
Location: 10982 - 12688 (+)
Gene ID: Rep_303_c_0_8
Type: CAZyme
Location: 12762 - 14276 (+)
Gene ID: Rep_303_c_0_9
Type:
Location: 14304 - 16772 (+)
Gene ID: Rep_303_c_0_10
Type:
Location: 16859 - 17383 (+)
Gene ID: Rep_303_c_0_11
Type: CAZyme
Location: 17394 - 19601 (+)
Gene ID: Rep_303_c_0_12
Type: CAZyme
Location: 19608 - 22637 (+)
Gene ID: Rep_303_c_0_13
Type:
Location: 22622 - 23266 (-)
Gene ID: Rep_303_c_0_14
Type: TC
Location: 23447 - 25114 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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