Cluster: Rep_3027_CGC9
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_3027
- CGC Family ID: CGCFAM_00092
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_3027_c_27 | Rep_3027_c_27_13 | 12428 | 13312 | + | 3.A.1.1.3 |
| TC | Rep_3027_c_27 | Rep_3027_c_27_14 | 13325 | 14218 | + | 3.A.1.1.18 |
| pfam | Rep_3027_c_27 | Rep_3027_c_27_15 | 14230 | 14424 | + | DUF6903 |
| CAZyme | Rep_3027_c_27 | Rep_3027_c_27_16 | 14444 | 16609 | + | GH112 |
| TF | Rep_3027_c_27 | Rep_3027_c_27_17 | 16606 | 17460 | - | HTH_AraC | HTH_AraC |
| CAZyme | Rep_3027_c_27 | Rep_3027_c_27_18 | 17631 | 19541 | - | GH143 |
Gene ID: Rep_3027_c_27_13
Type: TC
Location: 12428 - 13312 (+)
Type: TC
Location: 12428 - 13312 (+)
Gene ID: Rep_3027_c_27_14
Type: TC
Location: 13325 - 14218 (+)
Type: TC
Location: 13325 - 14218 (+)
Gene ID: Rep_3027_c_27_15
Type: pfam
Location: 14230 - 14424 (+)
Type: pfam
Location: 14230 - 14424 (+)
Gene ID: Rep_3027_c_27_16
Type: CAZyme
Location: 14444 - 16609 (+)
Type: CAZyme
Location: 14444 - 16609 (+)
Gene ID: Rep_3027_c_27_17
Type: TF
Location: 16606 - 17460 (-)
Type: TF
Location: 16606 - 17460 (-)
Gene ID: Rep_3027_c_27_18
Type: CAZyme
Location: 17631 - 19541 (-)
Type: CAZyme
Location: 17631 - 19541 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Christensenellales
Family
Aristaeellaceae
Genus
Limiplasma
Species
Limiplasma sp022769795
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.