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Cluster: Rep_3027_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_3027_c_3 Rep_3027_c_3_26 26420 30520 - GT39
pfam Rep_3027_c_3 Rep_3027_c_3_27 30517 31158 - RNase_HII
pfam Rep_3027_c_3 Rep_3027_c_3_28 31142 32053 - MMR_HSR1 | FeoB_N
TC Rep_3027_c_3 Rep_3027_c_3_29 32261 34006 - 3.D.1.5.1
TC Rep_3027_c_3 Rep_3027_c_3_30 34029 35819 - 3.D.1.5.1
NULL(UNKNOWN) Rep_3027_c_3 Rep_3027_c_3_31 35841 36215 - NULL(UNKNOWN)
[View Structural Homologs]
STP Rep_3027_c_3 Rep_3027_c_3_32 36219 36767 - HATPase_c
TC Rep_3027_c_3 Rep_3027_c_3_33 36774 37247 - 3.D.1.5.1
Gene ID: Rep_3027_c_3_26
Type: CAZyme
Location: 26420 - 30520 (-)
Gene ID: Rep_3027_c_3_27
Type: pfam
Location: 30517 - 31158 (-)
Gene ID: Rep_3027_c_3_28
Type: pfam
Location: 31142 - 32053 (-)
Gene ID: Rep_3027_c_3_29
Type: TC
Location: 32261 - 34006 (-)
Gene ID: Rep_3027_c_3_30
Type: TC
Location: 34029 - 35819 (-)
Gene ID: Rep_3027_c_3_31
Type:
Location: 35841 - 36215 (-)
Gene ID: Rep_3027_c_3_32
Type: STP
Location: 36219 - 36767 (-)
Gene ID: Rep_3027_c_3_33
Type: TC
Location: 36774 - 37247 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_3027_c_3_31 vegetarian > vegan 1.39074 0.01560

🧭 Explore Read Mapping of CGC

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