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Cluster: Rep_3027_CGC27

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_3027_c_140 Rep_3027_c_140_1 1 384 - 3.A.1.1.41
TC Rep_3027_c_140 Rep_3027_c_140_2 377 1273 - 3.A.1.1.7
TC Rep_3027_c_140 Rep_3027_c_140_3 1349 2668 - 3.A.1.1.17
TF Rep_3027_c_140 Rep_3027_c_140_4 2854 3732 - HTH_AraC | HTH_AraC
CAZyme Rep_3027_c_140 Rep_3027_c_140_5 3887 4822 + CE7
pfam Rep_3027_c_140 Rep_3027_c_140_6 5092 6006 - DHDPS
pfam Rep_3027_c_140 Rep_3027_c_140_7 6027 7136 - GFO_IDH_MocA | GFO_IDH_MocA_C | GFO_IDH_MocA_C3
TC Rep_3027_c_140 Rep_3027_c_140_8 7164 7766 - 3.A.1.1.25
Gene ID: Rep_3027_c_140_1
Type: TC
Location: 1 - 384 (-)
Gene ID: Rep_3027_c_140_2
Type: TC
Location: 377 - 1273 (-)
Gene ID: Rep_3027_c_140_3
Type: TC
Location: 1349 - 2668 (-)
Gene ID: Rep_3027_c_140_4
Type: TF
Location: 2854 - 3732 (-)
Gene ID: Rep_3027_c_140_5
Type: CAZyme
Location: 3887 - 4822 (+)
Gene ID: Rep_3027_c_140_6
Type: pfam
Location: 5092 - 6006 (-)
Gene ID: Rep_3027_c_140_7
Type: pfam
Location: 6027 - 7136 (-)
Gene ID: Rep_3027_c_140_8
Type: TC
Location: 7164 - 7766 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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