Cluster: Rep_3027_CGC20
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 3
- Substrate:
- Genome ID: Rep_3027
- CGC Family ID: CGCFAM_06870
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_3027_c_78 | Rep_3027_c_78_1 | 1 | 933 | - | 3.A.1.29.1 |
| TC | Rep_3027_c_78 | Rep_3027_c_78_2 | 1128 | 1676 | - | 3.A.1.29.1 |
| pfam | Rep_3027_c_78 | Rep_3027_c_78_3 | 1741 | 2595 | - | SAM_HAT_N | SAM_HAT_C |
| STP | Rep_3027_c_78 | Rep_3027_c_78_4 | 2704 | 3792 | - | PfkB |
| CAZyme | Rep_3027_c_78 | Rep_3027_c_78_5 | 3977 | 5818 | - | GH20 |
| CAZyme | Rep_3027_c_78 | Rep_3027_c_78_6 | 5818 | 8922 | - | GH38 |
| CAZyme | Rep_3027_c_78 | Rep_3027_c_78_7 | 8957 | 9943 | - | GH130_2 |
Gene ID: Rep_3027_c_78_1
Type: TC
Location: 1 - 933 (-)
Type: TC
Location: 1 - 933 (-)
Gene ID: Rep_3027_c_78_2
Type: TC
Location: 1128 - 1676 (-)
Type: TC
Location: 1128 - 1676 (-)
Gene ID: Rep_3027_c_78_3
Type: pfam
Location: 1741 - 2595 (-)
Type: pfam
Location: 1741 - 2595 (-)
Gene ID: Rep_3027_c_78_4
Type: STP
Location: 2704 - 3792 (-)
Type: STP
Location: 2704 - 3792 (-)
Gene ID: Rep_3027_c_78_5
Type: CAZyme
Location: 3977 - 5818 (-)
Type: CAZyme
Location: 3977 - 5818 (-)
Gene ID: Rep_3027_c_78_6
Type: CAZyme
Location: 5818 - 8922 (-)
Type: CAZyme
Location: 5818 - 8922 (-)
Gene ID: Rep_3027_c_78_7
Type: CAZyme
Location: 8957 - 9943 (-)
Type: CAZyme
Location: 8957 - 9943 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Christensenellales
Family
Aristaeellaceae
Genus
Limiplasma
Species
Limiplasma sp022769795
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.