Cluster: Rep_3027_CGC2
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate: alpha-glucan
- Genome ID: Rep_3027
- CGC Family ID: CGCFAM_00037
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_3027_c_2 | Rep_3027_c_2_33 | 28959 | 30641 | + | CBM34 | GH13_20 |
| pfam | Rep_3027_c_2 | Rep_3027_c_2_34 | 30638 | 32104 | + | SBP_bac_8 |
| TC | Rep_3027_c_2 | Rep_3027_c_2_35 | 32123 | 33496 | + | 3.A.1.1.27 |
| TC | Rep_3027_c_2 | Rep_3027_c_2_36 | 33493 | 34350 | + | 3.A.1.1.27 |
| CAZyme | Rep_3027_c_2 | Rep_3027_c_2_37 | 34350 | 35837 | + | GH13_36 |
| NULL(UNKNOWN) | Rep_3027_c_2 | Rep_3027_c_2_38 | 35896 | 37149 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_3027_c_2 | Rep_3027_c_2_39 | 37325 | 38776 | - | 3.A.7.14.1 |
Gene ID: Rep_3027_c_2_33
Type: CAZyme
Location: 28959 - 30641 (+)
Type: CAZyme
Location: 28959 - 30641 (+)
Gene ID: Rep_3027_c_2_34
Type: pfam
Location: 30638 - 32104 (+)
Type: pfam
Location: 30638 - 32104 (+)
Gene ID: Rep_3027_c_2_35
Type: TC
Location: 32123 - 33496 (+)
Type: TC
Location: 32123 - 33496 (+)
Gene ID: Rep_3027_c_2_36
Type: TC
Location: 33493 - 34350 (+)
Type: TC
Location: 33493 - 34350 (+)
Gene ID: Rep_3027_c_2_37
Type: CAZyme
Location: 34350 - 35837 (+)
Type: CAZyme
Location: 34350 - 35837 (+)
Gene ID: Rep_3027_c_2_38
Type:
Location: 35896 - 37149 (+)
Type:
Location: 35896 - 37149 (+)
Gene ID: Rep_3027_c_2_39
Type: TC
Location: 37325 - 38776 (-)
Type: TC
Location: 37325 - 38776 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Christensenellales
Family
Aristaeellaceae
Genus
Limiplasma
Species
Limiplasma sp022769795
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.