Cluster: Rep_3027_CGC13
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_3027
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_3027_c_34 | Rep_3027_c_34_5 | 2531 | 3376 | - | 3.A.1.149.1 |
| TF | Rep_3027_c_34 | Rep_3027_c_34_6 | 3373 | 3753 | - | GntR |
| STP | Rep_3027_c_34 | Rep_3027_c_34_7 | 3895 | 4476 | - | TetR_N |
| TC | Rep_3027_c_34 | Rep_3027_c_34_8 | 4537 | 6843 | - | 3.A.1.137.2 |
| pfam | Rep_3027_c_34 | Rep_3027_c_34_9 | 7036 | 7338 | + | Trns_repr_metal |
| TC | Rep_3027_c_34 | Rep_3027_c_34_10 | 7359 | 9863 | + | 3.A.3.5.15 |
| CAZyme | Rep_3027_c_34 | Rep_3027_c_34_11 | 10033 | 11394 | - | GH1 |
Gene ID: Rep_3027_c_34_5
Type: TC
Location: 2531 - 3376 (-)
Type: TC
Location: 2531 - 3376 (-)
Gene ID: Rep_3027_c_34_6
Type: TF
Location: 3373 - 3753 (-)
Type: TF
Location: 3373 - 3753 (-)
Gene ID: Rep_3027_c_34_7
Type: STP
Location: 3895 - 4476 (-)
Type: STP
Location: 3895 - 4476 (-)
Gene ID: Rep_3027_c_34_8
Type: TC
Location: 4537 - 6843 (-)
Type: TC
Location: 4537 - 6843 (-)
Gene ID: Rep_3027_c_34_9
Type: pfam
Location: 7036 - 7338 (+)
Type: pfam
Location: 7036 - 7338 (+)
Gene ID: Rep_3027_c_34_10
Type: TC
Location: 7359 - 9863 (+)
Type: TC
Location: 7359 - 9863 (+)
Gene ID: Rep_3027_c_34_11
Type: CAZyme
Location: 10033 - 11394 (-)
Type: CAZyme
Location: 10033 - 11394 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Christensenellales
Family
Aristaeellaceae
Genus
Limiplasma
Species
Limiplasma sp022769795
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.