Cluster: Rep_3027_CGC12
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_3027
- CGC Family ID: CGCFAM_11269
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_3027_c_33 | Rep_3027_c_33_6 | 6047 | 6919 | + | 3.A.1.1.36 |
| TC | Rep_3027_c_33 | Rep_3027_c_33_7 | 6919 | 7752 | + | 3.A.1.1.3 |
| pfam | Rep_3027_c_33 | Rep_3027_c_33_8 | 7806 | 9125 | + | SBP_bac_1 | SBP_bac_8 |
| TC | Rep_3027_c_33 | Rep_3027_c_33_9 | 9205 | 10851 | + | 3.D.10.1.3 |
| TF | Rep_3027_c_33 | Rep_3027_c_33_10 | 10894 | 11610 | + | GntR |
| CAZyme | Rep_3027_c_33 | Rep_3027_c_33_11 | 11653 | 12693 | + | GH33 |
Gene ID: Rep_3027_c_33_6
Type: TC
Location: 6047 - 6919 (+)
Type: TC
Location: 6047 - 6919 (+)
Gene ID: Rep_3027_c_33_7
Type: TC
Location: 6919 - 7752 (+)
Type: TC
Location: 6919 - 7752 (+)
Gene ID: Rep_3027_c_33_8
Type: pfam
Location: 7806 - 9125 (+)
Type: pfam
Location: 7806 - 9125 (+)
Gene ID: Rep_3027_c_33_9
Type: TC
Location: 9205 - 10851 (+)
Type: TC
Location: 9205 - 10851 (+)
Gene ID: Rep_3027_c_33_10
Type: TF
Location: 10894 - 11610 (+)
Type: TF
Location: 10894 - 11610 (+)
Gene ID: Rep_3027_c_33_11
Type: CAZyme
Location: 11653 - 12693 (+)
Type: CAZyme
Location: 11653 - 12693 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Christensenellales
Family
Aristaeellaceae
Genus
Limiplasma
Species
Limiplasma sp022769795
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.