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Cluster: Rep_3027_CGC10

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_3027_c_28 Rep_3027_c_28_1 160 1092 - 3.A.1.1.29
TC Rep_3027_c_28 Rep_3027_c_28_2 1112 2089 - 3.A.1.1.29
TF Rep_3027_c_28 Rep_3027_c_28_3 2360 3373 + LacI
CAZyme Rep_3027_c_28 Rep_3027_c_28_4 3395 5638 + GH3
pfam Rep_3027_c_28 Rep_3027_c_28_5 5953 7242 - Lar_N | LarA_C
TC Rep_3027_c_28 Rep_3027_c_28_6 7453 8172 - 3.A.1.4.7
TC Rep_3027_c_28 Rep_3027_c_28_7 8193 8951 - 3.A.1.4.10
pfam Rep_3027_c_28 Rep_3027_c_28_8 8944 9903 - BPD_transp_2
TC Rep_3027_c_28 Rep_3027_c_28_9 9896 10759 - 3.A.1.4.7
Gene ID: Rep_3027_c_28_1
Type: TC
Location: 160 - 1092 (-)
Gene ID: Rep_3027_c_28_2
Type: TC
Location: 1112 - 2089 (-)
Gene ID: Rep_3027_c_28_3
Type: TF
Location: 2360 - 3373 (+)
Gene ID: Rep_3027_c_28_4
Type: CAZyme
Location: 3395 - 5638 (+)
Gene ID: Rep_3027_c_28_5
Type: pfam
Location: 5953 - 7242 (-)
Gene ID: Rep_3027_c_28_6
Type: TC
Location: 7453 - 8172 (-)
Gene ID: Rep_3027_c_28_7
Type: TC
Location: 8193 - 8951 (-)
Gene ID: Rep_3027_c_28_8
Type: pfam
Location: 8944 - 9903 (-)
Gene ID: Rep_3027_c_28_9
Type: TC
Location: 9896 - 10759 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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