Cluster: Rep_3027_CGC1
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_3027
- CGC Family ID: CGCFAM_00231
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_3027_c_2 | Rep_3027_c_2_6 | 3930 | 5045 | - | GT28 |
| TC | Rep_3027_c_2 | Rep_3027_c_2_7 | 5357 | 6829 | + | 3.B.1.1.2 |
| pfam | Rep_3027_c_2 | Rep_3027_c_2_8 | 6851 | 7216 | + | OAD_gamma |
| TC | Rep_3027_c_2 | Rep_3027_c_2_9 | 7257 | 7646 | + | 3.B.1.1.2 |
| TC | Rep_3027_c_2 | Rep_3027_c_2_10 | 7702 | 9156 | + | 3.B.1.1.2 |
| TC | Rep_3027_c_2 | Rep_3027_c_2_11 | 9178 | 10578 | + | 3.B.1.1.6 |
Gene ID: Rep_3027_c_2_6
Type: CAZyme
Location: 3930 - 5045 (-)
Type: CAZyme
Location: 3930 - 5045 (-)
Gene ID: Rep_3027_c_2_7
Type: TC
Location: 5357 - 6829 (+)
Type: TC
Location: 5357 - 6829 (+)
Gene ID: Rep_3027_c_2_8
Type: pfam
Location: 6851 - 7216 (+)
Type: pfam
Location: 6851 - 7216 (+)
Gene ID: Rep_3027_c_2_9
Type: TC
Location: 7257 - 7646 (+)
Type: TC
Location: 7257 - 7646 (+)
Gene ID: Rep_3027_c_2_10
Type: TC
Location: 7702 - 9156 (+)
Type: TC
Location: 7702 - 9156 (+)
Gene ID: Rep_3027_c_2_11
Type: TC
Location: 9178 - 10578 (+)
Type: TC
Location: 9178 - 10578 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Christensenellales
Family
Aristaeellaceae
Genus
Limiplasma
Species
Limiplasma sp022769795
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_3027_c_2_9 | vegetarian > vegan | 1.25249 | 0.01560 |