Cluster: Rep_3024_CGC9
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_3024
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_3024_c_2 | Rep_3024_c_2_79 | 86223 | 87128 | + | 3.A.1.1.7 |
| TC | Rep_3024_c_2 | Rep_3024_c_2_80 | 87143 | 87973 | + | 3.A.1.1.41 |
| CAZyme | Rep_3024_c_2 | Rep_3024_c_2_81 | 87978 | 90053 | + | GH164 | GH42 |
| TF | Rep_3024_c_2 | Rep_3024_c_2_82 | 90364 | 92592 | - | LacI |
| TC | Rep_3024_c_2 | Rep_3024_c_2_83 | 92910 | 93914 | + | 3.A.1.2.18 |
| TC | Rep_3024_c_2 | Rep_3024_c_2_84 | 93939 | 95462 | + | 3.A.1.2.19 |
Gene ID: Rep_3024_c_2_79
Type: TC
Location: 86223 - 87128 (+)
Type: TC
Location: 86223 - 87128 (+)
Gene ID: Rep_3024_c_2_80
Type: TC
Location: 87143 - 87973 (+)
Type: TC
Location: 87143 - 87973 (+)
Gene ID: Rep_3024_c_2_81
Type: CAZyme
Location: 87978 - 90053 (+)
Type: CAZyme
Location: 87978 - 90053 (+)
Gene ID: Rep_3024_c_2_82
Type: TF
Location: 90364 - 92592 (-)
Type: TF
Location: 90364 - 92592 (-)
Gene ID: Rep_3024_c_2_83
Type: TC
Location: 92910 - 93914 (+)
Type: TC
Location: 92910 - 93914 (+)
Gene ID: Rep_3024_c_2_84
Type: TC
Location: 93939 - 95462 (+)
Type: TC
Location: 93939 - 95462 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Christensenellales
Family
Aristaeellaceae
Genus
Limiplasma
Species
Limiplasma sp023411375
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.