dbCAN Logo

Cluster: Rep_3024_CGC62

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_3024_c_39 Rep_3024_c_39_5 6249 7931 + GH13_20
STP Rep_3024_c_39 Rep_3024_c_39_6 7946 9199 + SBP_bac_1
TC Rep_3024_c_39 Rep_3024_c_39_7 9320 10204 + 3.A.1.1.4
TC Rep_3024_c_39 Rep_3024_c_39_8 10220 11071 + 3.A.1.1.44
pfam Rep_3024_c_39 Rep_3024_c_39_9 11199 11654 - HSP20
TF Rep_3024_c_39 Rep_3024_c_39_10 12034 13014 + LacI
CAZyme Rep_3024_c_39 Rep_3024_c_39_11 13058 14740 - GH13_18 | GH13_18
Gene ID: Rep_3024_c_39_5
Type: CAZyme
Location: 6249 - 7931 (+)
Gene ID: Rep_3024_c_39_6
Type: STP
Location: 7946 - 9199 (+)
Gene ID: Rep_3024_c_39_7
Type: TC
Location: 9320 - 10204 (+)
Gene ID: Rep_3024_c_39_8
Type: TC
Location: 10220 - 11071 (+)
Gene ID: Rep_3024_c_39_9
Type: pfam
Location: 11199 - 11654 (-)
Gene ID: Rep_3024_c_39_10
Type: TF
Location: 12034 - 13014 (+)
Gene ID: Rep_3024_c_39_11
Type: CAZyme
Location: 13058 - 14740 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

← Back to Cluster List