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Cluster: Rep_3024_CGC61

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_3024_c_38 Rep_3024_c_38_10 6946 8388 - GT5
pfam Rep_3024_c_38 Rep_3024_c_38_11 8411 9532 - NTP_transferase | Hexapep_GlmU
pfam Rep_3024_c_38 Rep_3024_c_38_12 9565 10737 - NTP_transferase | Hexapep_GlmU
CAZyme Rep_3024_c_38 Rep_3024_c_38_13 10850 12850 - GH13_9
TF Rep_3024_c_38 Rep_3024_c_38_14 13098 14099 + LacI
TC Rep_3024_c_38 Rep_3024_c_38_15 14360 15550 + 3.A.1.4.10
TC Rep_3024_c_38 Rep_3024_c_38_16 15834 16721 + 3.A.1.4.10
TC Rep_3024_c_38 Rep_3024_c_38_17 16760 17641 + 3.A.1.4.10
TC Rep_3024_c_38 Rep_3024_c_38_18 17638 18402 + 3.A.1.4.8
TC Rep_3024_c_38 Rep_3024_c_38_19 18406 19116 + 3.A.1.4.8
Gene ID: Rep_3024_c_38_10
Type: CAZyme
Location: 6946 - 8388 (-)
Gene ID: Rep_3024_c_38_11
Type: pfam
Location: 8411 - 9532 (-)
Gene ID: Rep_3024_c_38_12
Type: pfam
Location: 9565 - 10737 (-)
Gene ID: Rep_3024_c_38_13
Type: CAZyme
Location: 10850 - 12850 (-)
Gene ID: Rep_3024_c_38_14
Type: TF
Location: 13098 - 14099 (+)
Gene ID: Rep_3024_c_38_15
Type: TC
Location: 14360 - 15550 (+)
Gene ID: Rep_3024_c_38_16
Type: TC
Location: 15834 - 16721 (+)
Gene ID: Rep_3024_c_38_17
Type: TC
Location: 16760 - 17641 (+)
Gene ID: Rep_3024_c_38_18
Type: TC
Location: 17638 - 18402 (+)
Gene ID: Rep_3024_c_38_19
Type: TC
Location: 18406 - 19116 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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