Cluster: Rep_3024_CGC60
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 3
- Substrate:
- Genome ID: Rep_3024
- CGC Family ID: CGCFAM_00246
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_3024_c_35 | Rep_3024_c_35_3 | 3088 | 4071 | + | 3.A.1.1.10 |
| TC | Rep_3024_c_35 | Rep_3024_c_35_4 | 4142 | 5074 | + | 3.A.1.1.29 |
| pfam | Rep_3024_c_35 | Rep_3024_c_35_5 | 5104 | 6516 | + | DUF3502 |
| CAZyme | Rep_3024_c_35 | Rep_3024_c_35_6 | 6637 | 7623 | + | GH130_2 |
| CAZyme | Rep_3024_c_35 | Rep_3024_c_35_7 | 7645 | 10737 | + | GH38 |
| CAZyme | Rep_3024_c_35 | Rep_3024_c_35_8 | 10792 | 12633 | + | GH20 |
Gene ID: Rep_3024_c_35_3
Type: TC
Location: 3088 - 4071 (+)
Type: TC
Location: 3088 - 4071 (+)
Gene ID: Rep_3024_c_35_4
Type: TC
Location: 4142 - 5074 (+)
Type: TC
Location: 4142 - 5074 (+)
Gene ID: Rep_3024_c_35_5
Type: pfam
Location: 5104 - 6516 (+)
Type: pfam
Location: 5104 - 6516 (+)
Gene ID: Rep_3024_c_35_6
Type: CAZyme
Location: 6637 - 7623 (+)
Type: CAZyme
Location: 6637 - 7623 (+)
Gene ID: Rep_3024_c_35_7
Type: CAZyme
Location: 7645 - 10737 (+)
Type: CAZyme
Location: 7645 - 10737 (+)
Gene ID: Rep_3024_c_35_8
Type: CAZyme
Location: 10792 - 12633 (+)
Type: CAZyme
Location: 10792 - 12633 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Christensenellales
Family
Aristaeellaceae
Genus
Limiplasma
Species
Limiplasma sp023411375
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.