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Cluster: Rep_3024_CGC6

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_3024_c_1 Rep_3024_c_1_142 167800 168867 + GT28
TC Rep_3024_c_1 Rep_3024_c_1_143 169091 169933 - 3.A.1.1.45
TC Rep_3024_c_1 Rep_3024_c_1_144 169933 170835 - 3.A.1.1.45
TC Rep_3024_c_1 Rep_3024_c_1_145 171170 172444 - 3.A.1.1.45
TC Rep_3024_c_1 Rep_3024_c_1_146 172755 174125 + 3.A.1.1.45
TC Rep_3024_c_1 Rep_3024_c_1_147 174192 175040 + 3.A.1.1.45
TC Rep_3024_c_1 Rep_3024_c_1_148 175040 175900 + 3.A.1.1.45
TC Rep_3024_c_1 Rep_3024_c_1_149 176004 177026 - 2.A.98.1.4
Gene ID: Rep_3024_c_1_142
Type: CAZyme
Location: 167800 - 168867 (+)
Gene ID: Rep_3024_c_1_143
Type: TC
Location: 169091 - 169933 (-)
Gene ID: Rep_3024_c_1_144
Type: TC
Location: 169933 - 170835 (-)
Gene ID: Rep_3024_c_1_145
Type: TC
Location: 171170 - 172444 (-)
Gene ID: Rep_3024_c_1_146
Type: TC
Location: 172755 - 174125 (+)
Gene ID: Rep_3024_c_1_147
Type: TC
Location: 174192 - 175040 (+)
Gene ID: Rep_3024_c_1_148
Type: TC
Location: 175040 - 175900 (+)
Gene ID: Rep_3024_c_1_149
Type: TC
Location: 176004 - 177026 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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