Cluster: Rep_3024_CGC59
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_3024
- CGC Family ID: CGCFAM_01095
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_3024_c_34 | Rep_3024_c_34_15 | 19642 | 20655 | - | GH5_45 |
| STP | Rep_3024_c_34 | Rep_3024_c_34_16 | 20770 | 22266 | - | SBP_bac_1 |
| TC | Rep_3024_c_34 | Rep_3024_c_34_17 | 22323 | 23225 | - | 3.A.1.1.29 |
| TC | Rep_3024_c_34 | Rep_3024_c_34_18 | 23247 | 24188 | - | 3.A.1.1.10 |
| CAZyme | Rep_3024_c_34 | Rep_3024_c_34_19 | 24492 | 26561 | + | GH3 |
| NULL(UNKNOWN) | Rep_3024_c_34 | Rep_3024_c_34_20 | 26730 | 26900 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_3024_c_34 | Rep_3024_c_34_21 | 27249 | 28730 | + | 3.A.1.121.3 |
Gene ID: Rep_3024_c_34_15
Type: CAZyme
Location: 19642 - 20655 (-)
Type: CAZyme
Location: 19642 - 20655 (-)
Gene ID: Rep_3024_c_34_16
Type: STP
Location: 20770 - 22266 (-)
Type: STP
Location: 20770 - 22266 (-)
Gene ID: Rep_3024_c_34_17
Type: TC
Location: 22323 - 23225 (-)
Type: TC
Location: 22323 - 23225 (-)
Gene ID: Rep_3024_c_34_18
Type: TC
Location: 23247 - 24188 (-)
Type: TC
Location: 23247 - 24188 (-)
Gene ID: Rep_3024_c_34_19
Type: CAZyme
Location: 24492 - 26561 (+)
Type: CAZyme
Location: 24492 - 26561 (+)
Gene ID: Rep_3024_c_34_20
Type:
Location: 26730 - 26900 (-)
Type:
Location: 26730 - 26900 (-)
Gene ID: Rep_3024_c_34_21
Type: TC
Location: 27249 - 28730 (+)
Type: TC
Location: 27249 - 28730 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Christensenellales
Family
Aristaeellaceae
Genus
Limiplasma
Species
Limiplasma sp023411375
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.