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Cluster: Rep_3024_CGC58

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_3024_c_32 Rep_3024_c_32_7 7882 9483 + 3.A.1.121.4
pfam Rep_3024_c_32 Rep_3024_c_32_8 9480 9692 + DUF1653
STP Rep_3024_c_32 Rep_3024_c_32_9 9890 12007 + EAL | GAF | GGDEF
CAZyme Rep_3024_c_32 Rep_3024_c_32_10 12082 13821 - CBM34 | GH13_20
TC Rep_3024_c_32 Rep_3024_c_32_11 13842 14690 - 3.A.1.1.6
TC Rep_3024_c_32 Rep_3024_c_32_12 14737 15723 - 3.A.1.1.2
TC Rep_3024_c_32 Rep_3024_c_32_13 15849 17045 - 3.A.1.1.2
TF Rep_3024_c_32 Rep_3024_c_32_14 17241 18248 + LacI
TC Rep_3024_c_32 Rep_3024_c_32_15 18562 20490 - 3.A.1.121.4
NULL(UNKNOWN) Rep_3024_c_32 Rep_3024_c_32_16 20546 21181 - NULL(UNKNOWN)
[View Structural Homologs]
pfam Rep_3024_c_32 Rep_3024_c_32_17 21399 21710 - AzlD
TC Rep_3024_c_32 Rep_3024_c_32_18 21710 22444 - 2.A.78.1.3
Gene ID: Rep_3024_c_32_7
Type: TC
Location: 7882 - 9483 (+)
Gene ID: Rep_3024_c_32_8
Type: pfam
Location: 9480 - 9692 (+)
Gene ID: Rep_3024_c_32_9
Type: STP
Location: 9890 - 12007 (+)
Gene ID: Rep_3024_c_32_10
Type: CAZyme
Location: 12082 - 13821 (-)
Gene ID: Rep_3024_c_32_11
Type: TC
Location: 13842 - 14690 (-)
Gene ID: Rep_3024_c_32_12
Type: TC
Location: 14737 - 15723 (-)
Gene ID: Rep_3024_c_32_13
Type: TC
Location: 15849 - 17045 (-)
Gene ID: Rep_3024_c_32_14
Type: TF
Location: 17241 - 18248 (+)
Gene ID: Rep_3024_c_32_15
Type: TC
Location: 18562 - 20490 (-)
Gene ID: Rep_3024_c_32_16
Type:
Location: 20546 - 21181 (-)
Gene ID: Rep_3024_c_32_17
Type: pfam
Location: 21399 - 21710 (-)
Gene ID: Rep_3024_c_32_18
Type: TC
Location: 21710 - 22444 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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