Cluster: Rep_3024_CGC54
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_3024
- CGC Family ID: CGCFAM_00127
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_3024_c_28 | Rep_3024_c_28_4 | 3866 | 5593 | + | 3.A.1.135.5 |
| TC | Rep_3024_c_28 | Rep_3024_c_28_5 | 5593 | 7344 | + | 3.A.1.135.5 |
| NULL(UNKNOWN) | Rep_3024_c_28 | Rep_3024_c_28_6 | 7372 | 7560 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | Rep_3024_c_28 | Rep_3024_c_28_7 | 7578 | 8768 | - | AlkZ-like |
| CAZyme | Rep_3024_c_28 | Rep_3024_c_28_8 | 8920 | 10224 | + | GT1 |
| STP | Rep_3024_c_28 | Rep_3024_c_28_9 | 10235 | 10471 | + | FeoA |
| TC | Rep_3024_c_28 | Rep_3024_c_28_10 | 10526 | 12637 | + | 9.A.8.1.6 |
Gene ID: Rep_3024_c_28_4
Type: TC
Location: 3866 - 5593 (+)
Type: TC
Location: 3866 - 5593 (+)
Gene ID: Rep_3024_c_28_5
Type: TC
Location: 5593 - 7344 (+)
Type: TC
Location: 5593 - 7344 (+)
Gene ID: Rep_3024_c_28_6
Type:
Location: 7372 - 7560 (+)
Type:
Location: 7372 - 7560 (+)
Gene ID: Rep_3024_c_28_7
Type: pfam
Location: 7578 - 8768 (-)
Type: pfam
Location: 7578 - 8768 (-)
Gene ID: Rep_3024_c_28_8
Type: CAZyme
Location: 8920 - 10224 (+)
Type: CAZyme
Location: 8920 - 10224 (+)
Gene ID: Rep_3024_c_28_9
Type: STP
Location: 10235 - 10471 (+)
Type: STP
Location: 10235 - 10471 (+)
Gene ID: Rep_3024_c_28_10
Type: TC
Location: 10526 - 12637 (+)
Type: TC
Location: 10526 - 12637 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Christensenellales
Family
Aristaeellaceae
Genus
Limiplasma
Species
Limiplasma sp023411375
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.