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Cluster: Rep_3024_CGC49

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_3024_c_24 Rep_3024_c_24_24 25421 26926 - 3.A.1.1.10
TC Rep_3024_c_24 Rep_3024_c_24_25 27048 28757 - 3.A.16.1.2
CAZyme Rep_3024_c_24 Rep_3024_c_24_26 28938 31841 + GT51
NULL(UNKNOWN) Rep_3024_c_24 Rep_3024_c_24_27 31944 32114 - NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_3024_c_24 Rep_3024_c_24_28 32165 34138 - 3.A.1.134.9
TC Rep_3024_c_24 Rep_3024_c_24_29 34131 34898 - 3.A.1.134.4
STP Rep_3024_c_24 Rep_3024_c_24_30 35021 36031 - HATPase_c
TF Rep_3024_c_24 Rep_3024_c_24_31 36028 36699 - Trans_reg_C
TC Rep_3024_c_24 Rep_3024_c_24_32 36938 39403 + 9.B.34.1.2
Gene ID: Rep_3024_c_24_24
Type: TC
Location: 25421 - 26926 (-)
Gene ID: Rep_3024_c_24_25
Type: TC
Location: 27048 - 28757 (-)
Gene ID: Rep_3024_c_24_26
Type: CAZyme
Location: 28938 - 31841 (+)
Gene ID: Rep_3024_c_24_27
Type:
Location: 31944 - 32114 (-)
Gene ID: Rep_3024_c_24_28
Type: TC
Location: 32165 - 34138 (-)
Gene ID: Rep_3024_c_24_29
Type: TC
Location: 34131 - 34898 (-)
Gene ID: Rep_3024_c_24_30
Type: STP
Location: 35021 - 36031 (-)
Gene ID: Rep_3024_c_24_31
Type: TF
Location: 36028 - 36699 (-)
Gene ID: Rep_3024_c_24_32
Type: TC
Location: 36938 - 39403 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_3024_c_24_29 vegetarian > vegan 1.52509 0.00455

🧭 Explore Read Mapping of CGC

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