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Cluster: Rep_3024_CGC47

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_3024_c_22 Rep_3024_c_22_12 14068 16374 - 3.A.1.137.2
TC Rep_3024_c_22 Rep_3024_c_22_13 16368 17069 - 3.A.1.122.14
peptidase Rep_3024_c_22 Rep_3024_c_22_14 17265 19034 - U69.UPW
NULL(UNKNOWN) Rep_3024_c_22 Rep_3024_c_22_15 19048 20406 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_3024_c_22 Rep_3024_c_22_16 20449 21696 - GT4
pfam Rep_3024_c_22 Rep_3024_c_22_17 21701 22837 - Glyco_trans_1_4
CAZyme Rep_3024_c_22 Rep_3024_c_22_18 22837 23964 - GT4
pfam Rep_3024_c_22 Rep_3024_c_22_19 23961 24812 - 3Beta_HSD | Epimerase | RmlD_sub_bind | NAD_binding_4 | NAD_binding_10
TC Rep_3024_c_22 Rep_3024_c_22_20 24809 25441 - 9.B.18.1.3
Gene ID: Rep_3024_c_22_12
Type: TC
Location: 14068 - 16374 (-)
Gene ID: Rep_3024_c_22_13
Type: TC
Location: 16368 - 17069 (-)
Gene ID: Rep_3024_c_22_14
Type: peptidase
Location: 17265 - 19034 (-)
Gene ID: Rep_3024_c_22_15
Type:
Location: 19048 - 20406 (-)
Gene ID: Rep_3024_c_22_16
Type: CAZyme
Location: 20449 - 21696 (-)
Gene ID: Rep_3024_c_22_17
Type: pfam
Location: 21701 - 22837 (-)
Gene ID: Rep_3024_c_22_18
Type: CAZyme
Location: 22837 - 23964 (-)
Gene ID: Rep_3024_c_22_19
Type: pfam
Location: 23961 - 24812 (-)
Gene ID: Rep_3024_c_22_20
Type: TC
Location: 24809 - 25441 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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