Cluster: Rep_3024_CGC45
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_3024
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_3024_c_21 | Rep_3024_c_21_7 | 4636 | 5727 | + | 3.A.1.2.16 |
| TC | Rep_3024_c_21 | Rep_3024_c_21_8 | 5847 | 7352 | + | 3.A.1.2.20 |
| TC | Rep_3024_c_21 | Rep_3024_c_21_9 | 7345 | 8310 | + | 3.A.1.2.27 |
| TC | Rep_3024_c_21 | Rep_3024_c_21_10 | 8315 | 9298 | + | 3.A.1.2.15 |
| NULL(UNKNOWN) | Rep_3024_c_21 | Rep_3024_c_21_11 | 9324 | 10337 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | Rep_3024_c_21 | Rep_3024_c_21_12 | 10506 | 11516 | + | Sugar-bind |
| CAZyme | Rep_3024_c_21 | Rep_3024_c_21_13 | 11625 | 13799 | - | GH36 |
Gene ID: Rep_3024_c_21_7
Type: TC
Location: 4636 - 5727 (+)
Type: TC
Location: 4636 - 5727 (+)
Gene ID: Rep_3024_c_21_8
Type: TC
Location: 5847 - 7352 (+)
Type: TC
Location: 5847 - 7352 (+)
Gene ID: Rep_3024_c_21_9
Type: TC
Location: 7345 - 8310 (+)
Type: TC
Location: 7345 - 8310 (+)
Gene ID: Rep_3024_c_21_10
Type: TC
Location: 8315 - 9298 (+)
Type: TC
Location: 8315 - 9298 (+)
Gene ID: Rep_3024_c_21_11
Type:
Location: 9324 - 10337 (+)
Type:
Location: 9324 - 10337 (+)
Gene ID: Rep_3024_c_21_12
Type: pfam
Location: 10506 - 11516 (+)
Type: pfam
Location: 10506 - 11516 (+)
Gene ID: Rep_3024_c_21_13
Type: CAZyme
Location: 11625 - 13799 (-)
Type: CAZyme
Location: 11625 - 13799 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Christensenellales
Family
Aristaeellaceae
Genus
Limiplasma
Species
Limiplasma sp023411375
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.