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Cluster: Rep_3024_CGC43

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_3024_c_18 Rep_3024_c_18_2 2149 4287 - GH65
TF Rep_3024_c_18 Rep_3024_c_18_3 4362 5387 - LacI
STP Rep_3024_c_18 Rep_3024_c_18_4 5705 7075 + SBP_bac_1
TC Rep_3024_c_18 Rep_3024_c_18_5 7153 8061 + 3.A.1.1.20
TC Rep_3024_c_18 Rep_3024_c_18_6 8076 8978 + 3.A.1.1.6
CAZyme Rep_3024_c_18 Rep_3024_c_18_7 9489 11735 + GH65
CAZyme Rep_3024_c_18 Rep_3024_c_18_8 11708 13087 + GH28
NULL(UNKNOWN) Rep_3024_c_18 Rep_3024_c_18_9 13331 13678 - NULL(UNKNOWN)
[View Structural Homologs]
pfam Rep_3024_c_18 Rep_3024_c_18_10 13970 15070 - Mbeg1-like
TC Rep_3024_c_18 Rep_3024_c_18_11 15107 16456 - 2.A.66.1.33
CAZyme Rep_3024_c_18 Rep_3024_c_18_12 16548 19022 + GH2
Gene ID: Rep_3024_c_18_2
Type: CAZyme
Location: 2149 - 4287 (-)
Gene ID: Rep_3024_c_18_3
Type: TF
Location: 4362 - 5387 (-)
Gene ID: Rep_3024_c_18_4
Type: STP
Location: 5705 - 7075 (+)
Gene ID: Rep_3024_c_18_5
Type: TC
Location: 7153 - 8061 (+)
Gene ID: Rep_3024_c_18_6
Type: TC
Location: 8076 - 8978 (+)
Gene ID: Rep_3024_c_18_7
Type: CAZyme
Location: 9489 - 11735 (+)
Gene ID: Rep_3024_c_18_8
Type: CAZyme
Location: 11708 - 13087 (+)
Gene ID: Rep_3024_c_18_9
Type:
Location: 13331 - 13678 (-)
Gene ID: Rep_3024_c_18_10
Type: pfam
Location: 13970 - 15070 (-)
Gene ID: Rep_3024_c_18_11
Type: TC
Location: 15107 - 16456 (-)
Gene ID: Rep_3024_c_18_12
Type: CAZyme
Location: 16548 - 19022 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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