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Cluster: Rep_3024_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_3024_c_1 Rep_3024_c_1_99 114290 115150 + 2.A.115.1.2
STP Rep_3024_c_1 Rep_3024_c_1_100 115366 116151 - Response_reg | Spo0A_C
pfam Rep_3024_c_1 Rep_3024_c_1_101 116331 118229 - DUF6020
CAZyme Rep_3024_c_1 Rep_3024_c_1_102 118226 119164 - GT2
TC Rep_3024_c_1 Rep_3024_c_1_103 119230 123498 - 9.B.34.1.2
pfam Rep_3024_c_1 Rep_3024_c_1_104 123591 124046 - DUF386
STP Rep_3024_c_1 Rep_3024_c_1_105 124176 125717 - HD
TC Rep_3024_c_1 Rep_3024_c_1_106 126281 127360 - 3.A.1.20.1
TC Rep_3024_c_1 Rep_3024_c_1_107 127399 129117 - 3.A.1.20.4
STP Rep_3024_c_1 Rep_3024_c_1_108 129217 130239 - SBP_bac_1
pfam Rep_3024_c_1 Rep_3024_c_1_109 130462 131604 + NAD_synthase | QueC
CAZyme Rep_3024_c_1 Rep_3024_c_1_110 131787 134174 + GH94
Gene ID: Rep_3024_c_1_99
Type: TC
Location: 114290 - 115150 (+)
Gene ID: Rep_3024_c_1_100
Type: STP
Location: 115366 - 116151 (-)
Gene ID: Rep_3024_c_1_101
Type: pfam
Location: 116331 - 118229 (-)
Gene ID: Rep_3024_c_1_102
Type: CAZyme
Location: 118226 - 119164 (-)
Gene ID: Rep_3024_c_1_103
Type: TC
Location: 119230 - 123498 (-)
Gene ID: Rep_3024_c_1_104
Type: pfam
Location: 123591 - 124046 (-)
Gene ID: Rep_3024_c_1_105
Type: STP
Location: 124176 - 125717 (-)
Gene ID: Rep_3024_c_1_106
Type: TC
Location: 126281 - 127360 (-)
Gene ID: Rep_3024_c_1_107
Type: TC
Location: 127399 - 129117 (-)
Gene ID: Rep_3024_c_1_108
Type: STP
Location: 129217 - 130239 (-)
Gene ID: Rep_3024_c_1_109
Type: pfam
Location: 130462 - 131604 (+)
Gene ID: Rep_3024_c_1_110
Type: CAZyme
Location: 131787 - 134174 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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