Cluster: Rep_3024_CGC39
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_3024
- CGC Family ID: CGCFAM_00799
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_3024_c_16 | Rep_3024_c_16_45 | 55222 | 56067 | - | 3.A.1.1.25 |
| TC | Rep_3024_c_16 | Rep_3024_c_16_46 | 56067 | 56957 | - | 3.A.1.1.7 |
| STP | Rep_3024_c_16 | Rep_3024_c_16_47 | 57034 | 58344 | - | SBP_bac_1 |
| TF | Rep_3024_c_16 | Rep_3024_c_16_48 | 58556 | 59428 | - | HTH_AraC | HTH_AraC |
| CAZyme | Rep_3024_c_16 | Rep_3024_c_16_49 | 59600 | 60535 | + | CE7 |
| pfam | Rep_3024_c_16 | Rep_3024_c_16_50 | 60656 | 62506 | - | DUF4838 |
| TC | Rep_3024_c_16 | Rep_3024_c_16_51 | 62517 | 63272 | - | 1.A.13.5.1 |
Gene ID: Rep_3024_c_16_45
Type: TC
Location: 55222 - 56067 (-)
Type: TC
Location: 55222 - 56067 (-)
Gene ID: Rep_3024_c_16_46
Type: TC
Location: 56067 - 56957 (-)
Type: TC
Location: 56067 - 56957 (-)
Gene ID: Rep_3024_c_16_47
Type: STP
Location: 57034 - 58344 (-)
Type: STP
Location: 57034 - 58344 (-)
Gene ID: Rep_3024_c_16_48
Type: TF
Location: 58556 - 59428 (-)
Type: TF
Location: 58556 - 59428 (-)
Gene ID: Rep_3024_c_16_49
Type: CAZyme
Location: 59600 - 60535 (+)
Type: CAZyme
Location: 59600 - 60535 (+)
Gene ID: Rep_3024_c_16_50
Type: pfam
Location: 60656 - 62506 (-)
Type: pfam
Location: 60656 - 62506 (-)
Gene ID: Rep_3024_c_16_51
Type: TC
Location: 62517 - 63272 (-)
Type: TC
Location: 62517 - 63272 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Christensenellales
Family
Aristaeellaceae
Genus
Limiplasma
Species
Limiplasma sp023411375
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.