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Cluster: Rep_3024_CGC35

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_3024_c_15 Rep_3024_c_15_8 4638 6350 - CBM34 | GH13_20
TC Rep_3024_c_15 Rep_3024_c_15_9 6355 7194 - 3.A.1.1.6
TC Rep_3024_c_15 Rep_3024_c_15_10 7191 8087 - 3.A.1.1.2
TC Rep_3024_c_15 Rep_3024_c_15_11 8084 9292 - 3.A.1.1.16
pfam Rep_3024_c_15 Rep_3024_c_15_12 9362 10354 - CBM26 | CBM26 | CBM26
TC Rep_3024_c_15 Rep_3024_c_15_13 10735 11427 - 2.A.122.1.1
pfam Rep_3024_c_15 Rep_3024_c_15_14 11429 11803 - LrgA
TC Rep_3024_c_15 Rep_3024_c_15_15 11892 12761 - 2.A.7.3.59
pfam Rep_3024_c_15 Rep_3024_c_15_16 12892 13770 - LytR_cpsA_psr
TC Rep_3024_c_15 Rep_3024_c_15_17 13883 15046 - 2.A.4.7.9
NULL(UNKNOWN) Rep_3024_c_15 Rep_3024_c_15_18 15154 15681 - NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_3024_c_15 Rep_3024_c_15_19 15801 16523 - 3.A.1.3.15
TC Rep_3024_c_15 Rep_3024_c_15_20 16510 17259 - 3.A.1.3.20
TC Rep_3024_c_15 Rep_3024_c_15_21 17348 18094 - 3.A.1.3.27
Gene ID: Rep_3024_c_15_8
Type: CAZyme
Location: 4638 - 6350 (-)
Gene ID: Rep_3024_c_15_9
Type: TC
Location: 6355 - 7194 (-)
Gene ID: Rep_3024_c_15_10
Type: TC
Location: 7191 - 8087 (-)
Gene ID: Rep_3024_c_15_11
Type: TC
Location: 8084 - 9292 (-)
Gene ID: Rep_3024_c_15_12
Type: pfam
Location: 9362 - 10354 (-)
Gene ID: Rep_3024_c_15_13
Type: TC
Location: 10735 - 11427 (-)
Gene ID: Rep_3024_c_15_14
Type: pfam
Location: 11429 - 11803 (-)
Gene ID: Rep_3024_c_15_15
Type: TC
Location: 11892 - 12761 (-)
Gene ID: Rep_3024_c_15_16
Type: pfam
Location: 12892 - 13770 (-)
Gene ID: Rep_3024_c_15_17
Type: TC
Location: 13883 - 15046 (-)
Gene ID: Rep_3024_c_15_18
Type:
Location: 15154 - 15681 (-)
Gene ID: Rep_3024_c_15_19
Type: TC
Location: 15801 - 16523 (-)
Gene ID: Rep_3024_c_15_20
Type: TC
Location: 16510 - 17259 (-)
Gene ID: Rep_3024_c_15_21
Type: TC
Location: 17348 - 18094 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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