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Cluster: Rep_3024_CGC34

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_3024_c_13 Rep_3024_c_13_2 441 2255 - 8.A.59.2.1
STP Rep_3024_c_13 Rep_3024_c_13_3 2439 3692 + SBP_bac_1
TC Rep_3024_c_13 Rep_3024_c_13_4 3983 4846 + 3.A.1.1.42
TC Rep_3024_c_13 Rep_3024_c_13_5 4857 5687 + 3.A.1.1.18
CAZyme Rep_3024_c_13 Rep_3024_c_13_6 5692 7437 + GH66
STP Rep_3024_c_13 Rep_3024_c_13_7 7661 8896 - SBP_bac_1
TC Rep_3024_c_13 Rep_3024_c_13_8 9088 9972 - 3.A.1.1.20
TC Rep_3024_c_13 Rep_3024_c_13_9 9965 10858 - 3.A.1.1.36
CAZyme Rep_3024_c_13 Rep_3024_c_13_10 10864 12849 - GH65
CAZyme Rep_3024_c_13 Rep_3024_c_13_11 12842 15067 - GH31_7
Gene ID: Rep_3024_c_13_2
Type: TC
Location: 441 - 2255 (-)
Gene ID: Rep_3024_c_13_3
Type: STP
Location: 2439 - 3692 (+)
Gene ID: Rep_3024_c_13_4
Type: TC
Location: 3983 - 4846 (+)
Gene ID: Rep_3024_c_13_5
Type: TC
Location: 4857 - 5687 (+)
Gene ID: Rep_3024_c_13_6
Type: CAZyme
Location: 5692 - 7437 (+)
Gene ID: Rep_3024_c_13_7
Type: STP
Location: 7661 - 8896 (-)
Gene ID: Rep_3024_c_13_8
Type: TC
Location: 9088 - 9972 (-)
Gene ID: Rep_3024_c_13_9
Type: TC
Location: 9965 - 10858 (-)
Gene ID: Rep_3024_c_13_10
Type: CAZyme
Location: 10864 - 12849 (-)
Gene ID: Rep_3024_c_13_11
Type: CAZyme
Location: 12842 - 15067 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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