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Cluster: Rep_3024_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_3024_c_1 Rep_3024_c_1_45 50094 51950 + GH23
TC Rep_3024_c_1 Rep_3024_c_1_46 51947 53497 + 3.A.1.5.3
pfam Rep_3024_c_1 Rep_3024_c_1_47 53540 54562 + PG_binding_1 | CHAP
pfam Rep_3024_c_1 Rep_3024_c_1_48 54705 56276 + Peptidase_C14 | CHAT
CAZyme Rep_3024_c_1 Rep_3024_c_1_49 56289 57263 + GT2
TC Rep_3024_c_1 Rep_3024_c_1_50 57342 57887 + 1.E.19.1.7
pfam Rep_3024_c_1 Rep_3024_c_1_51 57900 58706 - Lactamase_B | Lactamase_B_2
TC Rep_3024_c_1 Rep_3024_c_1_52 58852 60324 + 2.A.50.2.1
Gene ID: Rep_3024_c_1_45
Type: CAZyme
Location: 50094 - 51950 (+)
Gene ID: Rep_3024_c_1_46
Type: TC
Location: 51947 - 53497 (+)
Gene ID: Rep_3024_c_1_47
Type: pfam
Location: 53540 - 54562 (+)
Gene ID: Rep_3024_c_1_48
Type: pfam
Location: 54705 - 56276 (+)
Gene ID: Rep_3024_c_1_49
Type: CAZyme
Location: 56289 - 57263 (+)
Gene ID: Rep_3024_c_1_50
Type: TC
Location: 57342 - 57887 (+)
Gene ID: Rep_3024_c_1_51
Type: pfam
Location: 57900 - 58706 (-)
Gene ID: Rep_3024_c_1_52
Type: TC
Location: 58852 - 60324 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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