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Cluster: Rep_3024_CGC25

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_3024_c_8 Rep_3024_c_8_61 72508 73491 + 3.A.1.5.12
TC Rep_3024_c_8 Rep_3024_c_8_62 73505 74515 + 3.A.1.5.29
TC Rep_3024_c_8 Rep_3024_c_8_63 74622 76556 + 3.A.1.5.29
TC Rep_3024_c_8 Rep_3024_c_8_64 76714 77700 + 3.A.1.5.29
TC Rep_3024_c_8 Rep_3024_c_8_65 77713 78864 + 3.A.1.5.29
NULL(UNKNOWN) Rep_3024_c_8 Rep_3024_c_8_66 78893 81007 + NULL(UNKNOWN)
[View Structural Homologs]
NULL(UNKNOWN) Rep_3024_c_8 Rep_3024_c_8_67 81515 82069 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_3024_c_8 Rep_3024_c_8_68 82230 83159 - GH43_26
CAZyme Rep_3024_c_8 Rep_3024_c_8_69 83283 85205 - GH127
TC Rep_3024_c_8 Rep_3024_c_8_70 85202 86905 - 8.A.59.2.1
TF Rep_3024_c_8 Rep_3024_c_8_71 86902 88431 - HTH_AraC | HTH_AraC
TC Rep_3024_c_8 Rep_3024_c_8_72 88453 89280 - 3.A.1.1.41
TC Rep_3024_c_8 Rep_3024_c_8_73 89288 90154 - 3.A.1.1.18
STP Rep_3024_c_8 Rep_3024_c_8_74 90541 91794 - SBP_bac_1
TF Rep_3024_c_8 Rep_3024_c_8_75 91947 92861 - HTH_1
TC Rep_3024_c_8 Rep_3024_c_8_76 93050 93931 + 3.A.1.1.20
TC Rep_3024_c_8 Rep_3024_c_8_77 93978 94820 + 3.A.1.1.4
Gene ID: Rep_3024_c_8_61
Type: TC
Location: 72508 - 73491 (+)
Gene ID: Rep_3024_c_8_62
Type: TC
Location: 73505 - 74515 (+)
Gene ID: Rep_3024_c_8_63
Type: TC
Location: 74622 - 76556 (+)
Gene ID: Rep_3024_c_8_64
Type: TC
Location: 76714 - 77700 (+)
Gene ID: Rep_3024_c_8_65
Type: TC
Location: 77713 - 78864 (+)
Gene ID: Rep_3024_c_8_66
Type:
Location: 78893 - 81007 (+)
Gene ID: Rep_3024_c_8_67
Type:
Location: 81515 - 82069 (+)
Gene ID: Rep_3024_c_8_68
Type: CAZyme
Location: 82230 - 83159 (-)
Gene ID: Rep_3024_c_8_69
Type: CAZyme
Location: 83283 - 85205 (-)
Gene ID: Rep_3024_c_8_70
Type: TC
Location: 85202 - 86905 (-)
Gene ID: Rep_3024_c_8_71
Type: TF
Location: 86902 - 88431 (-)
Gene ID: Rep_3024_c_8_72
Type: TC
Location: 88453 - 89280 (-)
Gene ID: Rep_3024_c_8_73
Type: TC
Location: 89288 - 90154 (-)
Gene ID: Rep_3024_c_8_74
Type: STP
Location: 90541 - 91794 (-)
Gene ID: Rep_3024_c_8_75
Type: TF
Location: 91947 - 92861 (-)
Gene ID: Rep_3024_c_8_76
Type: TC
Location: 93050 - 93931 (+)
Gene ID: Rep_3024_c_8_77
Type: TC
Location: 93978 - 94820 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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