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Cluster: Rep_3024_CGC21

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_3024_c_7 Rep_3024_c_7_13 20701 22026 + 2.A.1.84.3
CAZyme Rep_3024_c_7 Rep_3024_c_7_14 22020 23759 + GH2
pfam Rep_3024_c_7 Rep_3024_c_7_15 23874 25880 + Hydantoinase_A | Hydant_A_N
pfam Rep_3024_c_7 Rep_3024_c_7_16 25943 26320 - Desulfoferrodox | Desulfoferrod_N
CAZyme Rep_3024_c_7 Rep_3024_c_7_17 26465 27820 - GH32
TF Rep_3024_c_7 Rep_3024_c_7_18 27853 28866 - LacI
CAZyme Rep_3024_c_7 Rep_3024_c_7_19 28922 31087 - GH172
TC Rep_3024_c_7 Rep_3024_c_7_20 31108 31935 - 3.A.1.1.18
TC Rep_3024_c_7 Rep_3024_c_7_21 31928 32845 - 3.A.1.1.20
Gene ID: Rep_3024_c_7_13
Type: TC
Location: 20701 - 22026 (+)
Gene ID: Rep_3024_c_7_14
Type: CAZyme
Location: 22020 - 23759 (+)
Gene ID: Rep_3024_c_7_15
Type: pfam
Location: 23874 - 25880 (+)
Gene ID: Rep_3024_c_7_16
Type: pfam
Location: 25943 - 26320 (-)
Gene ID: Rep_3024_c_7_17
Type: CAZyme
Location: 26465 - 27820 (-)
Gene ID: Rep_3024_c_7_18
Type: TF
Location: 27853 - 28866 (-)
Gene ID: Rep_3024_c_7_19
Type: CAZyme
Location: 28922 - 31087 (-)
Gene ID: Rep_3024_c_7_20
Type: TC
Location: 31108 - 31935 (-)
Gene ID: Rep_3024_c_7_21
Type: TC
Location: 31928 - 32845 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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