Cluster: Rep_3024_CGC16
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_3024
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_3024_c_5 | Rep_3024_c_5_45 | 52204 | 53856 | + | 3.A.1.1.10 |
| TC | Rep_3024_c_5 | Rep_3024_c_5_46 | 53952 | 54893 | + | 3.A.1.1.10 |
| TC | Rep_3024_c_5 | Rep_3024_c_5_47 | 54913 | 55803 | + | 3.A.1.1.10 |
| CAZyme | Rep_3024_c_5 | Rep_3024_c_5_48 | 55825 | 56895 | + | CE19 |
| pfam | Rep_3024_c_5 | Rep_3024_c_5_49 | 56892 | 58031 | + | URO-D |
| CAZyme | Rep_3024_c_5 | Rep_3024_c_5_50 | 58055 | 59422 | + | GH4 |
Gene ID: Rep_3024_c_5_45
Type: TC
Location: 52204 - 53856 (+)
Type: TC
Location: 52204 - 53856 (+)
Gene ID: Rep_3024_c_5_46
Type: TC
Location: 53952 - 54893 (+)
Type: TC
Location: 53952 - 54893 (+)
Gene ID: Rep_3024_c_5_47
Type: TC
Location: 54913 - 55803 (+)
Type: TC
Location: 54913 - 55803 (+)
Gene ID: Rep_3024_c_5_48
Type: CAZyme
Location: 55825 - 56895 (+)
Type: CAZyme
Location: 55825 - 56895 (+)
Gene ID: Rep_3024_c_5_49
Type: pfam
Location: 56892 - 58031 (+)
Type: pfam
Location: 56892 - 58031 (+)
Gene ID: Rep_3024_c_5_50
Type: CAZyme
Location: 58055 - 59422 (+)
Type: CAZyme
Location: 58055 - 59422 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Christensenellales
Family
Aristaeellaceae
Genus
Limiplasma
Species
Limiplasma sp023411375
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.