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Cluster: Rep_3024_CGC12

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_3024_c_3 Rep_3024_c_3_44 41621 42580 - CE7
pfam Rep_3024_c_3 Rep_3024_c_3_45 42567 45233 - Glyco_hydro_38N | Glyco_hydro38C2
pfam Rep_3024_c_3 Rep_3024_c_3_46 45271 46791 - Glyco_hydro_42
TC Rep_3024_c_3 Rep_3024_c_3_47 46942 48669 - 9.B.33.1.1
TF Rep_3024_c_3 Rep_3024_c_3_48 48666 50216 - HTH_AraC | HTH_AraC
pfam Rep_3024_c_3 Rep_3024_c_3_49 50293 51741 - DUF4978
TC Rep_3024_c_3 Rep_3024_c_3_50 51747 52634 - 3.A.1.1.9
TC Rep_3024_c_3 Rep_3024_c_3_51 52646 53539 - 3.A.1.1.9
TC Rep_3024_c_3 Rep_3024_c_3_52 53645 55264 - 3.A.1.1.9
TC Rep_3024_c_3 Rep_3024_c_3_53 55501 57324 - 3.A.1.106.9
STP Rep_3024_c_3 Rep_3024_c_3_54 57430 62031 - EAL | GGDEF | SBP_bac_3 | SBP_bac_3
pfam Rep_3024_c_3 Rep_3024_c_3_55 62245 62727 - Amidase_6
TC Rep_3024_c_3 Rep_3024_c_3_56 63132 64658 + 3.A.1.2.13
TC Rep_3024_c_3 Rep_3024_c_3_57 64673 65689 + 3.A.1.2.11
TC Rep_3024_c_3 Rep_3024_c_3_58 65742 66635 + 3.A.1.2.13
TF Rep_3024_c_3 Rep_3024_c_3_59 66792 68378 + HTH_AraC | HTH_AraC
TC Rep_3024_c_3 Rep_3024_c_3_60 68393 69445 + 8.A.59.2.1
TC Rep_3024_c_3 Rep_3024_c_3_61 69442 70932 + 3.A.1.2.21
Gene ID: Rep_3024_c_3_44
Type: CAZyme
Location: 41621 - 42580 (-)
Gene ID: Rep_3024_c_3_45
Type: pfam
Location: 42567 - 45233 (-)
Gene ID: Rep_3024_c_3_46
Type: pfam
Location: 45271 - 46791 (-)
Gene ID: Rep_3024_c_3_47
Type: TC
Location: 46942 - 48669 (-)
Gene ID: Rep_3024_c_3_48
Type: TF
Location: 48666 - 50216 (-)
Gene ID: Rep_3024_c_3_49
Type: pfam
Location: 50293 - 51741 (-)
Gene ID: Rep_3024_c_3_50
Type: TC
Location: 51747 - 52634 (-)
Gene ID: Rep_3024_c_3_51
Type: TC
Location: 52646 - 53539 (-)
Gene ID: Rep_3024_c_3_52
Type: TC
Location: 53645 - 55264 (-)
Gene ID: Rep_3024_c_3_53
Type: TC
Location: 55501 - 57324 (-)
Gene ID: Rep_3024_c_3_54
Type: STP
Location: 57430 - 62031 (-)
Gene ID: Rep_3024_c_3_55
Type: pfam
Location: 62245 - 62727 (-)
Gene ID: Rep_3024_c_3_56
Type: TC
Location: 63132 - 64658 (+)
Gene ID: Rep_3024_c_3_57
Type: TC
Location: 64673 - 65689 (+)
Gene ID: Rep_3024_c_3_58
Type: TC
Location: 65742 - 66635 (+)
Gene ID: Rep_3024_c_3_59
Type: TF
Location: 66792 - 68378 (+)
Gene ID: Rep_3024_c_3_60
Type: TC
Location: 68393 - 69445 (+)
Gene ID: Rep_3024_c_3_61
Type: TC
Location: 69442 - 70932 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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