Cluster: Rep_3024_CGC10
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_3024
- CGC Family ID: CGCFAM_01596
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_3024_c_3 | Rep_3024_c_3_16 | 12390 | 13508 | + | 3.A.1.11.1 |
| TC | Rep_3024_c_3 | Rep_3024_c_3_17 | 13508 | 14365 | + | 3.A.1.11.1 |
| TC | Rep_3024_c_3 | Rep_3024_c_3_18 | 14379 | 15215 | + | 3.A.1.11.2 |
| TC | Rep_3024_c_3 | Rep_3024_c_3_19 | 15303 | 16352 | + | 3.A.1.11.1 |
| CAZyme | Rep_3024_c_3 | Rep_3024_c_3_20 | 16383 | 17498 | + | CE9 |
| CAZyme | Rep_3024_c_3 | Rep_3024_c_3_21 | 17607 | 19415 | - | GH2 |
Gene ID: Rep_3024_c_3_16
Type: TC
Location: 12390 - 13508 (+)
Type: TC
Location: 12390 - 13508 (+)
Gene ID: Rep_3024_c_3_17
Type: TC
Location: 13508 - 14365 (+)
Type: TC
Location: 13508 - 14365 (+)
Gene ID: Rep_3024_c_3_18
Type: TC
Location: 14379 - 15215 (+)
Type: TC
Location: 14379 - 15215 (+)
Gene ID: Rep_3024_c_3_19
Type: TC
Location: 15303 - 16352 (+)
Type: TC
Location: 15303 - 16352 (+)
Gene ID: Rep_3024_c_3_20
Type: CAZyme
Location: 16383 - 17498 (+)
Type: CAZyme
Location: 16383 - 17498 (+)
Gene ID: Rep_3024_c_3_21
Type: CAZyme
Location: 17607 - 19415 (-)
Type: CAZyme
Location: 17607 - 19415 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Christensenellales
Family
Aristaeellaceae
Genus
Limiplasma
Species
Limiplasma sp023411375
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.