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Cluster: Rep_3012_CGC9

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_3012_c_1 Rep_3012_c_1_650 677295 678950 - 8.A.59.2.1
NULL(UNKNOWN) Rep_3012_c_1 Rep_3012_c_1_651 678926 679147 - NULL(UNKNOWN)
[View Structural Homologs]
pfam Rep_3012_c_1 Rep_3012_c_1_652 679416 680240 + CBM9_1
TC Rep_3012_c_1 Rep_3012_c_1_653 680275 681642 + 3.A.1.1.30
CAZyme Rep_3012_c_1 Rep_3012_c_1_654 681632 683614 + GH3
TC Rep_3012_c_1 Rep_3012_c_1_655 683720 684751 + 3.A.1.1.30
TC Rep_3012_c_1 Rep_3012_c_1_656 684759 685652 + 3.A.1.1.24
CAZyme Rep_3012_c_1 Rep_3012_c_1_657 685685 687490 + GH3
TC Rep_3012_c_1 Rep_3012_c_1_658 687664 688785 + 3.A.1.1.16
Gene ID: Rep_3012_c_1_650
Type: TC
Location: 677295 - 678950 (-)
Gene ID: Rep_3012_c_1_651
Type:
Location: 678926 - 679147 (-)
Gene ID: Rep_3012_c_1_652
Type: pfam
Location: 679416 - 680240 (+)
Gene ID: Rep_3012_c_1_653
Type: TC
Location: 680275 - 681642 (+)
Gene ID: Rep_3012_c_1_654
Type: CAZyme
Location: 681632 - 683614 (+)
Gene ID: Rep_3012_c_1_655
Type: TC
Location: 683720 - 684751 (+)
Gene ID: Rep_3012_c_1_656
Type: TC
Location: 684759 - 685652 (+)
Gene ID: Rep_3012_c_1_657
Type: CAZyme
Location: 685685 - 687490 (+)
Gene ID: Rep_3012_c_1_658
Type: TC
Location: 687664 - 688785 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_3012_c_1_658 vegetarian > vegan 1.07850 0.00307

🧭 Explore Read Mapping of CGC

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