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Cluster: Rep_3012_CGC5

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_3012_c_1 Rep_3012_c_1_228 251708 252613 + 3.A.1.34.1
TC Rep_3012_c_1 Rep_3012_c_1_229 252630 253169 + 3.A.1.34.1
NULL(UNKNOWN) Rep_3012_c_1 Rep_3012_c_1_230 253147 253425 + NULL(UNKNOWN)
[View Structural Homologs]
NULL(UNKNOWN) Rep_3012_c_1 Rep_3012_c_1_231 253545 254381 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_3012_c_1 Rep_3012_c_1_232 254648 256444 + GH5_4
Gene ID: Rep_3012_c_1_228
Type: TC
Location: 251708 - 252613 (+)
Gene ID: Rep_3012_c_1_229
Type: TC
Location: 252630 - 253169 (+)
Gene ID: Rep_3012_c_1_230
Type:
Location: 253147 - 253425 (+)
Gene ID: Rep_3012_c_1_231
Type:
Location: 253545 - 254381 (+)
Gene ID: Rep_3012_c_1_232
Type: CAZyme
Location: 254648 - 256444 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_3012_c_1_232 vegetarian > vegan 1.01192 0.00307

🧭 Explore Read Mapping of CGC

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