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Cluster: Rep_3012_CGC48

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_3012_c_1 Rep_3012_c_1_2720 2981433 2982833 + GT2
CAZyme Rep_3012_c_1 Rep_3012_c_1_2721 2983132 2984415 + GT1
TC Rep_3012_c_1 Rep_3012_c_1_2722 2984825 2986627 + 3.A.1.106.3
TC Rep_3012_c_1 Rep_3012_c_1_2723 2986629 2988488 + 3.A.1.106.3
pfam Rep_3012_c_1 Rep_3012_c_1_2724 2988847 2989293 + Acetyltransf_1 | Acetyltransf_7 | Acetyltransf_9
pfam Rep_3012_c_1 Rep_3012_c_1_2725 2989748 2991049 + MFS_3 | MFS_1
TC Rep_3012_c_1 Rep_3012_c_1_2726 2991250 2992095 - 3.A.1.24.6
TC Rep_3012_c_1 Rep_3012_c_1_2727 2992451 2993122 - 3.A.1.24.1
TC Rep_3012_c_1 Rep_3012_c_1_2728 2993165 2994169 - 3.A.1.24.5
Gene ID: Rep_3012_c_1_2720
Type: CAZyme
Location: 2981433 - 2982833 (+)
Gene ID: Rep_3012_c_1_2721
Type: CAZyme
Location: 2983132 - 2984415 (+)
Gene ID: Rep_3012_c_1_2722
Type: TC
Location: 2984825 - 2986627 (+)
Gene ID: Rep_3012_c_1_2723
Type: TC
Location: 2986629 - 2988488 (+)
Gene ID: Rep_3012_c_1_2724
Type: pfam
Location: 2988847 - 2989293 (+)
Gene ID: Rep_3012_c_1_2725
Type: pfam
Location: 2989748 - 2991049 (+)
Gene ID: Rep_3012_c_1_2726
Type: TC
Location: 2991250 - 2992095 (-)
Gene ID: Rep_3012_c_1_2727
Type: TC
Location: 2992451 - 2993122 (-)
Gene ID: Rep_3012_c_1_2728
Type: TC
Location: 2993165 - 2994169 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_3012_c_1_2720 vegetarian > vegan 1.42488 0.00307
Rep_3012_c_1_2721 vegetarian > vegan 1.44072 0.00307
Rep_3012_c_1_2724 vegetarian > vegan 1.10383 0.00307
Rep_3012_c_1_2725 vegetarian > vegan 1.27903 0.00307

🧭 Explore Read Mapping of CGC

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