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Cluster: Rep_3012_CGC47

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_3012_c_1 Rep_3012_c_1_2639 2884364 2885176 - 3.A.1.7.1
TC Rep_3012_c_1 Rep_3012_c_1_2640 2885173 2886066 - 3.A.1.7.5
TC Rep_3012_c_1 Rep_3012_c_1_2641 2886063 2886917 - 3.A.1.7.5
STP Rep_3012_c_1 Rep_3012_c_1_2642 2887266 2888132 + LysR_substrate | SBP_bac_1
peptidase Rep_3012_c_1 Rep_3012_c_1_2643 2888574 2889941 - M20.UNA
CAZyme Rep_3012_c_1 Rep_3012_c_1_2644 2890538 2891575 - CE4
pfam Rep_3012_c_1 Rep_3012_c_1_2645 2891640 2892539 - LRR_5 | LRR_5
peptidase Rep_3012_c_1 Rep_3012_c_1_2646 2892899 2894068 - S12.UPW
CAZyme Rep_3012_c_1 Rep_3012_c_1_2647 2894100 2895023 - GH26
Gene ID: Rep_3012_c_1_2639
Type: TC
Location: 2884364 - 2885176 (-)
Gene ID: Rep_3012_c_1_2640
Type: TC
Location: 2885173 - 2886066 (-)
Gene ID: Rep_3012_c_1_2641
Type: TC
Location: 2886063 - 2886917 (-)
Gene ID: Rep_3012_c_1_2642
Type: STP
Location: 2887266 - 2888132 (+)
Gene ID: Rep_3012_c_1_2643
Type: peptidase
Location: 2888574 - 2889941 (-)
Gene ID: Rep_3012_c_1_2644
Type: CAZyme
Location: 2890538 - 2891575 (-)
Gene ID: Rep_3012_c_1_2645
Type: pfam
Location: 2891640 - 2892539 (-)
Gene ID: Rep_3012_c_1_2646
Type: peptidase
Location: 2892899 - 2894068 (-)
Gene ID: Rep_3012_c_1_2647
Type: CAZyme
Location: 2894100 - 2895023 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_3012_c_1_2640 vegetarian > vegan 1.03933 0.00307
Rep_3012_c_1_2642 vegetarian > vegan 1.07730 0.00307
Rep_3012_c_1_2643 vegetarian > vegan 1.24275 0.00307
Rep_3012_c_1_2644 vegetarian > vegan 1.31627 0.00307
Rep_3012_c_1_2645 vegetarian > vegan 1.12839 0.00307
Rep_3012_c_1_2646 vegetarian > vegan 1.18779 0.00307

🧭 Explore Read Mapping of CGC

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