dbCAN Logo

Cluster: Rep_3012_CGC46

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_3012_c_1 Rep_3012_c_1_2616 2861762 2863936 + 3.A.3.32.4
NULL(UNKNOWN) Rep_3012_c_1 Rep_3012_c_1_2617 2863940 2864644 + NULL(UNKNOWN)
[View Structural Homologs]
NULL(UNKNOWN) Rep_3012_c_1 Rep_3012_c_1_2618 2864713 2864991 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_3012_c_1 Rep_3012_c_1_2619 2865273 2866919 + GT2
TC Rep_3012_c_1 Rep_3012_c_1_2620 2867292 2868278 + 3.A.1.103.6
pfam Rep_3012_c_1 Rep_3012_c_1_2621 2868494 2868952 - RecA | RecA_C
pfam Rep_3012_c_1 Rep_3012_c_1_2622 2869279 2869662 - RecA | ATPase | Rad51
TC Rep_3012_c_1 Rep_3012_c_1_2623 2869787 2871139 - 2.A.66.1.37
Gene ID: Rep_3012_c_1_2616
Type: TC
Location: 2861762 - 2863936 (+)
Gene ID: Rep_3012_c_1_2617
Type:
Location: 2863940 - 2864644 (+)
Gene ID: Rep_3012_c_1_2618
Type:
Location: 2864713 - 2864991 (+)
Gene ID: Rep_3012_c_1_2619
Type: CAZyme
Location: 2865273 - 2866919 (+)
Gene ID: Rep_3012_c_1_2620
Type: TC
Location: 2867292 - 2868278 (+)
Gene ID: Rep_3012_c_1_2621
Type: pfam
Location: 2868494 - 2868952 (-)
Gene ID: Rep_3012_c_1_2622
Type: pfam
Location: 2869279 - 2869662 (-)
Gene ID: Rep_3012_c_1_2623
Type: TC
Location: 2869787 - 2871139 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_3012_c_1_2617 vegetarian > vegan 1.15066 0.00307
Rep_3012_c_1_2619 vegetarian > vegan 1.15652 0.00307
Rep_3012_c_1_2620 vegetarian > vegan 1.14944 0.00307
Rep_3012_c_1_2623 vegetarian > vegan 1.00956 0.00307

🧭 Explore Read Mapping of CGC

← Back to Cluster List