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Cluster: Rep_3012_CGC45

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_3012_c_1 Rep_3012_c_1_2581 2810986 2814951 - GH2
TC Rep_3012_c_1 Rep_3012_c_1_2582 2815299 2817161 + 1.C.39.4.5
TC Rep_3012_c_1 Rep_3012_c_1_2583 2817530 2818426 + 3.A.5.1.1
pfam Rep_3012_c_1 Rep_3012_c_1_2584 2818616 2819338 + SpoU_methylase
pfam Rep_3012_c_1 Rep_3012_c_1_2585 2819449 2821464 + Big_2 | Big_2 | Big_2 | Big_2
CAZyme Rep_3012_c_1 Rep_3012_c_1_2586 2822382 2823899 - CE20
CAZyme Rep_3012_c_1 Rep_3012_c_1_2587 2823899 2825080 - GH130_1
CAZyme Rep_3012_c_1 Rep_3012_c_1_2588 2825413 2826258 - GH130_2
Gene ID: Rep_3012_c_1_2581
Type: CAZyme
Location: 2810986 - 2814951 (-)
Gene ID: Rep_3012_c_1_2582
Type: TC
Location: 2815299 - 2817161 (+)
Gene ID: Rep_3012_c_1_2583
Type: TC
Location: 2817530 - 2818426 (+)
Gene ID: Rep_3012_c_1_2584
Type: pfam
Location: 2818616 - 2819338 (+)
Gene ID: Rep_3012_c_1_2585
Type: pfam
Location: 2819449 - 2821464 (+)
Gene ID: Rep_3012_c_1_2586
Type: CAZyme
Location: 2822382 - 2823899 (-)
Gene ID: Rep_3012_c_1_2587
Type: CAZyme
Location: 2823899 - 2825080 (-)
Gene ID: Rep_3012_c_1_2588
Type: CAZyme
Location: 2825413 - 2826258 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_3012_c_1_2581 vegetarian > vegan 1.49308 0.00307
Rep_3012_c_1_2584 vegetarian > vegan 1.12658 0.00307
Rep_3012_c_1_2585 vegetarian > vegan 1.16462 0.00307
Rep_3012_c_1_2586 vegetarian > vegan 1.24146 0.00307

🧭 Explore Read Mapping of CGC

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