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Cluster: Rep_3012_CGC42

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_3012_c_1 Rep_3012_c_1_2452 2668284 2668973 + 1.C.82.1.1
CAZyme Rep_3012_c_1 Rep_3012_c_1_2453 2669445 2670155 - GH32
CAZyme Rep_3012_c_1 Rep_3012_c_1_2454 2670184 2670966 - GH32
peptidase Rep_3012_c_1 Rep_3012_c_1_2455 2671147 2671812 + C26.964
peptidase Rep_3012_c_1 Rep_3012_c_1_2456 2671778 2672758 + C26.964
TC Rep_3012_c_1 Rep_3012_c_1_2457 2673259 2673675 - 1.A.22.1.8
pfam Rep_3012_c_1 Rep_3012_c_1_2458 2673776 2674672 + EamA | EamA
TC Rep_3012_c_1 Rep_3012_c_1_2459 2674771 2675574 + 3.A.1.3.10
TC Rep_3012_c_1 Rep_3012_c_1_2460 2675692 2676738 + 3.A.1.3.12
TC Rep_3012_c_1 Rep_3012_c_1_2461 2676751 2677530 + 3.A.1.3.24
TC Rep_3012_c_1 Rep_3012_c_1_2462 2677748 2679592 - 2.A.16.2.2
Gene ID: Rep_3012_c_1_2452
Type: TC
Location: 2668284 - 2668973 (+)
Gene ID: Rep_3012_c_1_2453
Type: CAZyme
Location: 2669445 - 2670155 (-)
Gene ID: Rep_3012_c_1_2454
Type: CAZyme
Location: 2670184 - 2670966 (-)
Gene ID: Rep_3012_c_1_2455
Type: peptidase
Location: 2671147 - 2671812 (+)
Gene ID: Rep_3012_c_1_2456
Type: peptidase
Location: 2671778 - 2672758 (+)
Gene ID: Rep_3012_c_1_2457
Type: TC
Location: 2673259 - 2673675 (-)
Gene ID: Rep_3012_c_1_2458
Type: pfam
Location: 2673776 - 2674672 (+)
Gene ID: Rep_3012_c_1_2459
Type: TC
Location: 2674771 - 2675574 (+)
Gene ID: Rep_3012_c_1_2460
Type: TC
Location: 2675692 - 2676738 (+)
Gene ID: Rep_3012_c_1_2461
Type: TC
Location: 2676751 - 2677530 (+)
Gene ID: Rep_3012_c_1_2462
Type: TC
Location: 2677748 - 2679592 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_3012_c_1_2453 vegetarian > vegan 1.18183 0.00307
Rep_3012_c_1_2454 vegetarian > vegan 1.09953 0.00307
Rep_3012_c_1_2459 vegetarian > vegan 1.05273 0.00307

🧭 Explore Read Mapping of CGC

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