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Cluster: Rep_3012_CGC40

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_3012_c_1 Rep_3012_c_1_2287 2480559 2483072 - GH2
pfam Rep_3012_c_1 Rep_3012_c_1_2288 2483232 2484374 - Cellulase-like
NULL(UNKNOWN) Rep_3012_c_1 Rep_3012_c_1_2289 2484602 2486188 - NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_3012_c_1 Rep_3012_c_1_2290 2486279 2487208 - 3.A.1.1.10
TC Rep_3012_c_1 Rep_3012_c_1_2291 2487208 2488155 - 3.A.1.1.10
TF Rep_3012_c_1 Rep_3012_c_1_2292 2488414 2489517 + HTH_AraC | HTH_AraC
TC Rep_3012_c_1 Rep_3012_c_1_2293 2489521 2491338 + 8.A.59.2.1
peptidase Rep_3012_c_1 Rep_3012_c_1_2294 2491335 2492207 + S12.UPW
CAZyme Rep_3012_c_1 Rep_3012_c_1_2295 2492224 2493291 + CE15
Gene ID: Rep_3012_c_1_2287
Type: CAZyme
Location: 2480559 - 2483072 (-)
Gene ID: Rep_3012_c_1_2288
Type: pfam
Location: 2483232 - 2484374 (-)
Gene ID: Rep_3012_c_1_2289
Type:
Location: 2484602 - 2486188 (-)
Gene ID: Rep_3012_c_1_2290
Type: TC
Location: 2486279 - 2487208 (-)
Gene ID: Rep_3012_c_1_2291
Type: TC
Location: 2487208 - 2488155 (-)
Gene ID: Rep_3012_c_1_2292
Type: TF
Location: 2488414 - 2489517 (+)
Gene ID: Rep_3012_c_1_2293
Type: TC
Location: 2489521 - 2491338 (+)
Gene ID: Rep_3012_c_1_2294
Type: peptidase
Location: 2491335 - 2492207 (+)
Gene ID: Rep_3012_c_1_2295
Type: CAZyme
Location: 2492224 - 2493291 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_3012_c_1_2287 vegetarian > vegan 1.03679 0.00307
Rep_3012_c_1_2290 vegetarian > vegan 1.00498 0.00307
Rep_3012_c_1_2293 vegetarian > vegan 1.16489 0.00307
Rep_3012_c_1_2294 vegetarian > vegan 1.30279 0.00307
Rep_3012_c_1_2295 vegetarian > vegan 1.28670 0.00307

🧭 Explore Read Mapping of CGC

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