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Cluster: Rep_3012_CGC35

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_3012_c_1 Rep_3012_c_1_2011 2158737 2161394 - GH2
CAZyme Rep_3012_c_1 Rep_3012_c_1_2012 2161609 2162730 - CE9
NULL(UNKNOWN) Rep_3012_c_1 Rep_3012_c_1_2013 2163011 2163421 + NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_3012_c_1 Rep_3012_c_1_2014 2163425 2164306 + 1.E.12.1.3
pfam Rep_3012_c_1 Rep_3012_c_1_2015 2164312 2165073 + DnaJ
TC Rep_3012_c_1 Rep_3012_c_1_2016 2165235 2167043 + 1.A.33.1.4
Gene ID: Rep_3012_c_1_2011
Type: CAZyme
Location: 2158737 - 2161394 (-)
Gene ID: Rep_3012_c_1_2012
Type: CAZyme
Location: 2161609 - 2162730 (-)
Gene ID: Rep_3012_c_1_2013
Type:
Location: 2163011 - 2163421 (+)
Gene ID: Rep_3012_c_1_2014
Type: TC
Location: 2163425 - 2164306 (+)
Gene ID: Rep_3012_c_1_2015
Type: pfam
Location: 2164312 - 2165073 (+)
Gene ID: Rep_3012_c_1_2016
Type: TC
Location: 2165235 - 2167043 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_3012_c_1_2011 vegetarian > vegan 1.14186 0.00307
Rep_3012_c_1_2012 vegetarian > vegan 1.22655 0.00307
Rep_3012_c_1_2013 vegetarian > vegan 1.20291 0.00307
Rep_3012_c_1_2014 vegetarian > vegan 1.18175 0.00307
Rep_3012_c_1_2015 vegetarian > vegan 1.05941 0.00307

🧭 Explore Read Mapping of CGC

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