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Cluster: Rep_3012_CGC32

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_3012_c_1 Rep_3012_c_1_1759 1886169 1887836 - GH2
NULL(UNKNOWN) Rep_3012_c_1 Rep_3012_c_1_1760 1887987 1888523 - NULL(UNKNOWN)
[View Structural Homologs]
pfam Rep_3012_c_1 Rep_3012_c_1_1761 1888688 1889617 - SUFBD_core
TC Rep_3012_c_1 Rep_3012_c_1_1762 1889617 1890372 - 3.A.1.25.5
CAZyme Rep_3012_c_1 Rep_3012_c_1_1763 1890522 1891478 - GH43_22
pfam Rep_3012_c_1 Rep_3012_c_1_1764 1891887 1892438 - Ribosomal_S30AE | Ribosom_S30AE_C
pfam Rep_3012_c_1 Rep_3012_c_1_1765 1898612 1898875 - Ribosomal_S20p
TC Rep_3012_c_1 Rep_3012_c_1_1766 1899100 1901367 - 3.A.3.6.10
TC Rep_3012_c_1 Rep_3012_c_1_1767 1901747 1903066 - 2.A.40.1.4
Gene ID: Rep_3012_c_1_1759
Type: CAZyme
Location: 1886169 - 1887836 (-)
Gene ID: Rep_3012_c_1_1760
Type:
Location: 1887987 - 1888523 (-)
Gene ID: Rep_3012_c_1_1761
Type: pfam
Location: 1888688 - 1889617 (-)
Gene ID: Rep_3012_c_1_1762
Type: TC
Location: 1889617 - 1890372 (-)
Gene ID: Rep_3012_c_1_1763
Type: CAZyme
Location: 1890522 - 1891478 (-)
Gene ID: Rep_3012_c_1_1764
Type: pfam
Location: 1891887 - 1892438 (-)
Gene ID: Rep_3012_c_1_1765
Type: pfam
Location: 1898612 - 1898875 (-)
Gene ID: Rep_3012_c_1_1766
Type: TC
Location: 1899100 - 1901367 (-)
Gene ID: Rep_3012_c_1_1767
Type: TC
Location: 1901747 - 1903066 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_3012_c_1_1763 vegetarian > vegan 1.08860 0.00307
Rep_3012_c_1_1766 vegetarian > vegan 1.01362 0.00307

🧭 Explore Read Mapping of CGC

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