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Cluster: Rep_3012_CGC28

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_3012_c_1 Rep_3012_c_1_1601 1709267 1711732 - GH2
TC Rep_3012_c_1 Rep_3012_c_1_1602 1711753 1712694 - 8.A.5.1.4
TF Rep_3012_c_1 Rep_3012_c_1_1603 1712711 1713370 - GerE
STP Rep_3012_c_1 Rep_3012_c_1_1604 1713367 1714923 - HATPase_c
TC Rep_3012_c_1 Rep_3012_c_1_1605 1715110 1715958 - 3.A.1.1.34
TC Rep_3012_c_1 Rep_3012_c_1_1606 1715973 1716923 - 3.A.1.1.4
STP Rep_3012_c_1 Rep_3012_c_1_1607 1717030 1718370 - SBP_bac_1
CAZyme Rep_3012_c_1 Rep_3012_c_1_1608 1718938 1720929 - GH120
Gene ID: Rep_3012_c_1_1601
Type: CAZyme
Location: 1709267 - 1711732 (-)
Gene ID: Rep_3012_c_1_1602
Type: TC
Location: 1711753 - 1712694 (-)
Gene ID: Rep_3012_c_1_1603
Type: TF
Location: 1712711 - 1713370 (-)
Gene ID: Rep_3012_c_1_1604
Type: STP
Location: 1713367 - 1714923 (-)
Gene ID: Rep_3012_c_1_1605
Type: TC
Location: 1715110 - 1715958 (-)
Gene ID: Rep_3012_c_1_1606
Type: TC
Location: 1715973 - 1716923 (-)
Gene ID: Rep_3012_c_1_1607
Type: STP
Location: 1717030 - 1718370 (-)
Gene ID: Rep_3012_c_1_1608
Type: CAZyme
Location: 1718938 - 1720929 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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