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Cluster: Rep_3012_CGC20

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_3012_c_1 Rep_3012_c_1_1113 1155543 1157000 + 3.A.1.1.27
TC Rep_3012_c_1 Rep_3012_c_1_1114 1156997 1157827 + 3.A.1.1.27
TC Rep_3012_c_1 Rep_3012_c_1_1115 1157824 1157955 + 3.A.1.1.27
CAZyme Rep_3012_c_1 Rep_3012_c_1_1116 1158078 1159577 + GH13_36
CAZyme Rep_3012_c_1 Rep_3012_c_1_1117 1159729 1161204 + GH77
CAZyme Rep_3012_c_1 Rep_3012_c_1_1118 1161254 1163596 + GT35
TC Rep_3012_c_1 Rep_3012_c_1_1119 1164179 1164955 + 3.A.1.17.8
TC Rep_3012_c_1 Rep_3012_c_1_1120 1164948 1165730 + 3.A.1.17.1
Gene ID: Rep_3012_c_1_1113
Type: TC
Location: 1155543 - 1157000 (+)
Gene ID: Rep_3012_c_1_1114
Type: TC
Location: 1156997 - 1157827 (+)
Gene ID: Rep_3012_c_1_1115
Type: TC
Location: 1157824 - 1157955 (+)
Gene ID: Rep_3012_c_1_1116
Type: CAZyme
Location: 1158078 - 1159577 (+)
Gene ID: Rep_3012_c_1_1117
Type: CAZyme
Location: 1159729 - 1161204 (+)
Gene ID: Rep_3012_c_1_1118
Type: CAZyme
Location: 1161254 - 1163596 (+)
Gene ID: Rep_3012_c_1_1119
Type: TC
Location: 1164179 - 1164955 (+)
Gene ID: Rep_3012_c_1_1120
Type: TC
Location: 1164948 - 1165730 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_3012_c_1_1116 vegetarian > vegan 1.05897 0.00307
Rep_3012_c_1_1117 vegetarian > vegan 1.20827 0.00307
Rep_3012_c_1_1119 vegetarian > vegan 1.33139 0.00307
Rep_3012_c_1_1120 vegetarian > vegan 1.41517 0.00307

🧭 Explore Read Mapping of CGC

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