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Cluster: Rep_3012_CGC19

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_3012_c_1 Rep_3012_c_1_1058 1096063 1097613 - GH28
CAZyme Rep_3012_c_1 Rep_3012_c_1_1059 1097625 1098722 - GH105
TC Rep_3012_c_1 Rep_3012_c_1_1060 1098889 1100259 + 2.A.66.1.26
CAZyme Rep_3012_c_1 Rep_3012_c_1_1061 1100631 1102127 - GH43_10
CAZyme Rep_3012_c_1 Rep_3012_c_1_1062 1102124 1102876 - CE12
TC Rep_3012_c_1 Rep_3012_c_1_1063 1103093 1103977 - 3.A.1.1.29
TC Rep_3012_c_1 Rep_3012_c_1_1064 1103996 1104946 - 3.A.1.1.10
Gene ID: Rep_3012_c_1_1058
Type: CAZyme
Location: 1096063 - 1097613 (-)
Gene ID: Rep_3012_c_1_1059
Type: CAZyme
Location: 1097625 - 1098722 (-)
Gene ID: Rep_3012_c_1_1060
Type: TC
Location: 1098889 - 1100259 (+)
Gene ID: Rep_3012_c_1_1061
Type: CAZyme
Location: 1100631 - 1102127 (-)
Gene ID: Rep_3012_c_1_1062
Type: CAZyme
Location: 1102124 - 1102876 (-)
Gene ID: Rep_3012_c_1_1063
Type: TC
Location: 1103093 - 1103977 (-)
Gene ID: Rep_3012_c_1_1064
Type: TC
Location: 1103996 - 1104946 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_3012_c_1_1059 vegetarian > vegan 1.23782 0.00307
Rep_3012_c_1_1060 vegetarian > vegan 1.28506 0.00307
Rep_3012_c_1_1061 vegetarian > vegan 1.07774 0.00307
Rep_3012_c_1_1062 vegetarian > vegan 1.05325 0.00307

🧭 Explore Read Mapping of CGC

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