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Cluster: Rep_3012_CGC13

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_3012_c_1 Rep_3012_c_1_717 751579 753549 + GH120
TC Rep_3012_c_1 Rep_3012_c_1_718 753600 754628 - 3.A.1.135.6
pfam Rep_3012_c_1 Rep_3012_c_1_719 754612 755289 - ABC_membrane
TC Rep_3012_c_1 Rep_3012_c_1_720 755282 757015 - 3.A.1.210.4
TF Rep_3012_c_1 Rep_3012_c_1_721 757021 757479 - MarR
pfam Rep_3012_c_1 Rep_3012_c_1_722 757941 759137 + Bmp
TC Rep_3012_c_1 Rep_3012_c_1_723 759300 760496 + 3.A.1.2.17
TC Rep_3012_c_1 Rep_3012_c_1_724 760460 760819 + 3.A.1.2.3
Gene ID: Rep_3012_c_1_717
Type: CAZyme
Location: 751579 - 753549 (+)
Gene ID: Rep_3012_c_1_718
Type: TC
Location: 753600 - 754628 (-)
Gene ID: Rep_3012_c_1_719
Type: pfam
Location: 754612 - 755289 (-)
Gene ID: Rep_3012_c_1_720
Type: TC
Location: 755282 - 757015 (-)
Gene ID: Rep_3012_c_1_721
Type: TF
Location: 757021 - 757479 (-)
Gene ID: Rep_3012_c_1_722
Type: pfam
Location: 757941 - 759137 (+)
Gene ID: Rep_3012_c_1_723
Type: TC
Location: 759300 - 760496 (+)
Gene ID: Rep_3012_c_1_724
Type: TC
Location: 760460 - 760819 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_3012_c_1_717 vegetarian > vegan 1.01910 0.00307

🧭 Explore Read Mapping of CGC

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