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Cluster: Rep_3012_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_3012_c_1 Rep_3012_c_1_7 8887 10044 - GH179
TF Rep_3012_c_1 Rep_3012_c_1_8 10187 10897 - HTH_AraC | HTH_AraC
TC Rep_3012_c_1 Rep_3012_c_1_9 11384 12337 + 3.A.1.1.10
TC Rep_3012_c_1 Rep_3012_c_1_10 12354 13265 + 3.A.1.1.29
TC Rep_3012_c_1 Rep_3012_c_1_11 13492 15078 + 3.A.1.1.10
pfam Rep_3012_c_1 Rep_3012_c_1_12 15221 16384 + GFO_IDH_MocA | GFO_IDH_MocA_C | GFO_IDH_MocA_C3
CAZyme Rep_3012_c_1 Rep_3012_c_1_13 16408 17580 + GH177
Gene ID: Rep_3012_c_1_7
Type: CAZyme
Location: 8887 - 10044 (-)
Gene ID: Rep_3012_c_1_8
Type: TF
Location: 10187 - 10897 (-)
Gene ID: Rep_3012_c_1_9
Type: TC
Location: 11384 - 12337 (+)
Gene ID: Rep_3012_c_1_10
Type: TC
Location: 12354 - 13265 (+)
Gene ID: Rep_3012_c_1_11
Type: TC
Location: 13492 - 15078 (+)
Gene ID: Rep_3012_c_1_12
Type: pfam
Location: 15221 - 16384 (+)
Gene ID: Rep_3012_c_1_13
Type: CAZyme
Location: 16408 - 17580 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_3012_c_1_11 vegetarian > vegan 1.06866 0.00307
Rep_3012_c_1_12 vegetarian > vegan 1.27986 0.00307
Rep_3012_c_1_13 vegetarian > vegan 1.15619 0.00307

🧭 Explore Read Mapping of CGC

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